Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HMGN3P1-201ENST00000453847 193 ntBASIC6.2□□□□□ -1.42
LIG3P49916 RNA5SP400-201ENST00000517155 111 ntBASIC6.2□□□□□ -1.42
LIG3P49916 OR4R3P-201ENST00000525084 838 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AC130365.2-201ENST00000525882 1201 ntBASIC6.2□□□□□ -1.42
LIG3P49916 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.2□□□□□ -1.42
LIG3P49916 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 HYKK-203ENST00000563233 734 ntTSL 2 BASIC6.2□□□□□ -1.42
LIG3P49916 AC092332.1-201ENST00000563684 829 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 AL391840.1-201ENST00000571144 367 ntBASIC6.2□□□□□ -1.42
LIG3P49916 MIR4307-201ENST00000582802 84 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AC027229.1-201ENST00000583887 253 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 AL356055.1-201ENST00000602528 446 ntBASIC6.2□□□□□ -1.42
LIG3P49916 DUXAP4-201ENST00000603046 613 ntBASIC6.2□□□□□ -1.42
LIG3P49916 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 AL590282.1-201ENST00000610379 1136 ntBASIC6.2□□□□□ -1.42
LIG3P49916 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC6.2□□□□□ -1.42
LIG3P49916 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 AL591135.1-201ENST00000401578 5914 ntBASIC6.2□□□□□ -1.42
LIG3P49916 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.2□□□□□ -1.42
LIG3P49916 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIG3P49916 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIG3P49916 TMSB4XP4-201ENST00000323496 618 ntBASIC6.19□□□□□ -1.42
LIG3P49916 Y_RNA.11-201ENST00000362375 109 ntBASIC6.19□□□□□ -1.42
LIG3P49916 SNORA21-201ENST00000362423 132 ntBASIC6.19□□□□□ -1.42
LIG3P49916 RNY4P14-201ENST00000363656 96 ntBASIC6.19□□□□□ -1.42
LIG3P49916 SNORA43.1-201ENST00000364863 140 ntBASIC6.19□□□□□ -1.42
LIG3P49916 RNU6-761P-201ENST00000384148 107 ntBASIC6.19□□□□□ -1.42
LIG3P49916 SNORA51.9-201ENST00000384295 124 ntBASIC6.19□□□□□ -1.42
LIG3P49916 RPS3AP36-201ENST00000398190 775 ntBASIC6.19□□□□□ -1.42
LIG3P49916 RNA5SP156-201ENST00000410250 110 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AP000534.2-201ENST00000412729 568 ntBASIC6.19□□□□□ -1.42
LIG3P49916 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.19□□□□□ -1.42
LIG3P49916 AC138393.2-201ENST00000414742 246 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC012498.1-201ENST00000424037 437 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 NPM1P34-201ENST00000428821 893 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC138761.5-201ENST00000433967 325 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC023141.3-201ENST00000436698 278 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 RPL7P11-201ENST00000437586 658 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 PGBD4P3-201ENST00000440731 581 ntBASIC6.19□□□□□ -1.42
LIG3P49916 RPS10P18-201ENST00000442662 495 ntBASIC6.19□□□□□ -1.42
LIG3P49916 GAPDHP23-201ENST00000444823 993 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 AC112187.1-201ENST00000455837 479 ntBASIC6.19□□□□□ -1.42
LIG3P49916 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
LIG3P49916 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 OR5AQ1P-201ENST00000527596 927 ntBASIC6.19□□□□□ -1.42
LIG3P49916 PMS2P3-207ENST00000529061 717 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.19□□□□□ -1.42
LIG3P49916 MAL2-203ENST00000534619 578 ntTSL 4 BASIC6.19□□□□□ -1.42
LIG3P49916 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.19□□□□□ -1.42
LIG3P49916 TXNP4-201ENST00000575018 310 ntBASIC6.19□□□□□ -1.42
LIG3P49916 MIR5186-201ENST00000577504 120 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC6.19□□□□□ -1.42
LIG3P49916 MIR544B-201ENST00000582372 78 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.19□□□□□ -1.42
LIG3P49916 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 AC022916.3-201ENST00000592961 742 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.19□□□□□ -1.42
LIG3P49916 AC008687.2-201ENST00000597865 520 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC079315.1-201ENST00000602952 623 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AC002553.4-201ENST00000616896 331 ntBASIC6.19□□□□□ -1.42
LIG3P49916 AL512652.1-201ENST00000619006 500 ntBASIC6.19□□□□□ -1.42
LIG3P49916 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC6.19□□□□□ -1.42
LIG3P49916 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.19□□□□□ -1.42
LIG3P49916 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIG3P49916 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIG3P49916 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIG3P49916 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIG3P49916 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.19□□□□□ -1.42
LIG3P49916 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
LIG3P49916 TCP11X1-202ENST00000622971 1372 ntBASIC6.18□□□□□ -1.42
LIG3P49916 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms