Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HOXC9P31274 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXC9P31274 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
HOXC9P31274 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXC9P31274 MAPK10-372ENST00000641954 3413 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.35□□□□□ -1.55
HOXC9P31274 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
HOXC9P31274 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 MTND5P23-201ENST00000430812 1655 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC017002.4-201ENST00000604721 1525 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC083899.2-201ENST00000423285 1376 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 OR4A15-201ENST00000314706 1035 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 SNORD35B-201ENST00000363660 87 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 RNA5SP399-201ENST00000364003 117 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXC9P31274 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXC9P31274 AC073335.1-201ENST00000427776 363 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXC9P31274 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXC9P31274 SNRPFP2-201ENST00000440710 251 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AL627224.1-201ENST00000448334 444 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 RAD23BP3-201ENST00000454157 1152 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXC9P31274 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 CYCSP30-201ENST00000546447 172 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC106785.3-201ENST00000564064 847 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXC9P31274 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
HOXC9P31274 MIR4472-2-201ENST00000582069 67 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC012417.1-201ENST00000582307 1039 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC005242.1-201ENST00000585658 438 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC010487.1-201ENST00000594408 1172 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 BMS1P7-201ENST00000602440 1052 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC008739.3-201ENST00000603262 127 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 LSM1P2-201ENST00000604911 322 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 AC025016.1-201ENST00000616746 682 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXC9P31274 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.35□□□□□ -1.55
HOXC9P31274 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXC9P31274 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXC9P31274 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXC9P31274 AC245100.2-201ENST00000454544 1679 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXC9P31274 RNU1-15P-201ENST00000353977 144 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 RANP4-201ENST00000413361 655 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 AC004448.2-201ENST00000422360 586 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 NPM1P34-201ENST00000428821 893 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXC9P31274 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXC9P31274 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXC9P31274 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXC9P31274 RNU6-1102P-201ENST00000516149 96 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 VTA1P2-201ENST00000520205 911 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXC9P31274 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 AC122134.1-202ENST00000569111 1201 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 AL451044.1-201ENST00000604867 238 ntBASIC5.34□□□□□ -1.55
HOXC9P31274 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXC9P31274 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HOXC9P31274 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXC9P31274 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXC9P31274 Z82217.1-201ENST00000625157 8149 ntBASIC5.34□□□□□ -1.56
HOXC9P31274 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.56
HOXC9P31274 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXC9P31274 AC021242.1-201ENST00000507315 2035 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXC9P31274 AL353692.2-201ENST00000407054 335 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 VN1R8P-201ENST00000407739 893 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 PGBD4P8-201ENST00000412993 562 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 RPS23P10-201ENST00000416185 486 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 MTCYBP7-201ENST00000419540 1134 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 OR4F13P-201ENST00000428478 931 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXC9P31274 FTLP19-201ENST00000433300 394 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 PTP4A1P3-201ENST00000433661 420 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXC9P31274 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXC9P31274 AC239798.3-201ENST00000454459 408 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 MTND2P6-201ENST00000455337 1030 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 DEFB109F-201ENST00000491870 277 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 RPL23AP73-201ENST00000492507 471 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AC104629.1-201ENST00000494226 508 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms