Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.05□□□□□ -1.6
BDNFP23560 ENPP7P9-201ENST00000514456 627 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.05□□□□□ -1.6
BDNFP23560 OR5BC1P-201ENST00000529327 739 ntBASIC5.05□□□□□ -1.6
BDNFP23560 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.05□□□□□ -1.6
BDNFP23560 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.05□□□□□ -1.6
BDNFP23560 AC009948.4-201ENST00000604692 675 ntBASIC5.05□□□□□ -1.6
BDNFP23560 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.05□□□□□ -1.6
BDNFP23560 AC018926.1-201ENST00000616335 435 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AL356118.1-201ENST00000635272 1078 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AL590396.4-201ENST00000636779 956 ntBASIC5.05□□□□□ -1.6
BDNFP23560 PABPC1P7-201ENST00000413177 1513 ntBASIC5.05□□□□□ -1.6
BDNFP23560 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
BDNFP23560 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
BDNFP23560 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
BDNFP23560 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
BDNFP23560 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
BDNFP23560 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 AC079741.1-201ENST00000321498 212 ntBASIC5.04□□□□□ -1.6
BDNFP23560 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
BDNFP23560 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 SSXP10-201ENST00000402595 565 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AL603766.1-201ENST00000407763 664 ntBASIC5.04□□□□□ -1.6
BDNFP23560 RN7SKP106-201ENST00000410832 272 ntBASIC5.04□□□□□ -1.6
BDNFP23560 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 RPL34P6-201ENST00000432390 345 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AC016831.4-201ENST00000438302 307 ntBASIC5.04□□□□□ -1.6
BDNFP23560 RPL7P33-201ENST00000444159 742 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AL513533.1-201ENST00000453728 415 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AC133473.1-201ENST00000455173 299 ntBASIC5.04□□□□□ -1.6
BDNFP23560 CDC42P1-201ENST00000456658 548 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AC010326.1-201ENST00000462726 602 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.04□□□□□ -1.6
BDNFP23560 RPL5P23-201ENST00000496040 868 ntBASIC5.04□□□□□ -1.6
BDNFP23560 RNU6-202P-201ENST00000515998 96 ntBASIC5.04□□□□□ -1.6
BDNFP23560 RNA5SP303-201ENST00000516192 130 ntBASIC5.04□□□□□ -1.6
BDNFP23560 RNU1-6P-201ENST00000516290 144 ntBASIC5.04□□□□□ -1.6
BDNFP23560 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.04□□□□□ -1.6
BDNFP23560 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC5.04□□□□□ -1.6
BDNFP23560 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.04□□□□□ -1.6
BDNFP23560 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.04□□□□□ -1.6
BDNFP23560 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.04□□□□□ -1.6
BDNFP23560 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 AC008759.3-201ENST00000613300 508 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AC105227.2-201ENST00000615075 605 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AC004825.2-201ENST00000616634 455 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AL158196.1-201ENST00000616786 434 ntBASIC5.04□□□□□ -1.6
BDNFP23560 AL713922.2-201ENST00000619384 716 ntBASIC5.04□□□□□ -1.6
BDNFP23560 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BDNFP23560 AL391684.1-202ENST00000641293 1636 ntBASIC5.04□□□□□ -1.6
BDNFP23560 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
BDNFP23560 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
BDNFP23560 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
BDNFP23560 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
BDNFP23560 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.03□□□□□ -1.6
BDNFP23560 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.03□□□□□ -1.6
BDNFP23560 RNU6-549P-201ENST00000384433 107 ntBASIC5.03□□□□□ -1.6
BDNFP23560 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
BDNFP23560 ZNF603P-201ENST00000405613 487 ntBASIC5.03□□□□□ -1.6
BDNFP23560 Y_RNA.625-201ENST00000411256 107 ntBASIC5.03□□□□□ -1.6
BDNFP23560 VN1R37P-201ENST00000419096 748 ntBASIC5.03□□□□□ -1.6
BDNFP23560 PAICSP7-201ENST00000419829 962 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC5.03□□□□□ -1.6
BDNFP23560 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.03□□□□□ -1.6
BDNFP23560 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.03□□□□□ -1.6
BDNFP23560 AC096632.1-201ENST00000427395 310 ntBASIC5.03□□□□□ -1.6
BDNFP23560 YWHAZP8-201ENST00000436935 731 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AL138878.2-201ENST00000440581 1241 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AC011753.3-201ENST00000443436 406 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.03□□□□□ -1.6
BDNFP23560 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.03□□□□□ -1.6
BDNFP23560 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.03□□□□□ -1.6
BDNFP23560 FTH1P9-201ENST00000513251 355 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.03□□□□□ -1.6
BDNFP23560 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC5.03□□□□□ -1.6
BDNFP23560 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms