Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 TRPM3-210ENST00000377111 4618 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 AC245060.6-201ENST00000624350 8420 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
COL9A1P20849 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 SNORD27-201ENST00000363981 72 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 RNY1-201ENST00000364228 113 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 MRPS6P2-201ENST00000381143 370 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 RNU6-921P-201ENST00000384361 107 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 Y_RNA.526-201ENST00000384572 110 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
COL9A1P20849 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 MRPS18CP6-201ENST00000423587 223 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 RPL12P34-201ENST00000424532 479 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 RPL7P46-201ENST00000425129 740 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC004383.1-201ENST00000438135 289 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 AC091153.1-201ENST00000466297 402 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 TRBVB-201ENST00000477100 408 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 RN7SL817P-201ENST00000480777 288 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.29□□□□□ -1.24
COL9A1P20849 RN7SKP233-201ENST00000517005 110 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 IGLV2-28-201ENST00000520681 304 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 RPA2P1-201ENST00000556557 721 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 HMGB1P50-201ENST00000605814 607 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AL513218.1-201ENST00000606527 391 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.29□□□□□ -1.24
COL9A1P20849 DUSP12P1-201ENST00000612874 516 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AC025034.2-201ENST00000623264 286 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 MIR4272-201ENST00000635924 64 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 TPTE2P4-201ENST00000258589 1605 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
COL9A1P20849 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL9A1P20849 SLFN12L-202ENST00000361112 2752 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC7.29□□□□□ -1.24
COL9A1P20849 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.29□□□□□ -1.24
COL9A1P20849 MAPK10-357ENST00000641831 2858 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC7.28□□□□□ -1.24
COL9A1P20849 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC7.28□□□□□ -1.24
COL9A1P20849 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 MROH3P-202ENST00000635940 2556 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC7.28□□□□□ -1.24
COL9A1P20849 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
COL9A1P20849 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC7.28□□□□□ -1.24
COL9A1P20849 LINC02099-202ENST00000522158 2980 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC7.28□□□□□ -1.24
COL9A1P20849 BRCC3-203ENST00000369459 2641 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC7.28□□□□□ -1.24
COL9A1P20849 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 Y_RNA.64-201ENST00000362845 102 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RNU6-97P-201ENST00000363387 104 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RNU6-511P-201ENST00000363496 107 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RNU1-85P-201ENST00000364127 164 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RN7SKP189-201ENST00000365042 330 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RNU2-14P-201ENST00000411053 191 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 AC092651.1-201ENST00000426110 312 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 AC016027.5-201ENST00000427227 210 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RPL23AP69-201ENST00000431134 458 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 KRTAP8-2P-201ENST00000440620 186 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.28□□□□□ -1.24
COL9A1P20849 AC005297.2-201ENST00000450430 606 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 VPS25P1-201ENST00000455691 508 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 RN7SL751P-201ENST00000473281 284 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 AC026979.1-201ENST00000492525 396 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 AC026801.1-201ENST00000497178 464 ntBASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms