Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC067852.4-201ENST00000590314 478 ntBASIC3.79□□□□□ -1.8
VCANP13611 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC3.79□□□□□ -1.8
VCANP13611 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.79□□□□□ -1.8
VCANP13611 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC3.79□□□□□ -1.8
VCANP13611 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VCANP13611 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
VCANP13611 AL136131.1-201ENST00000406079 803 ntBASIC3.79□□□□□ -1.8
VCANP13611 BMS1P22-201ENST00000414726 313 ntBASIC3.79□□□□□ -1.8
VCANP13611 NPM1P11-201ENST00000417106 855 ntBASIC3.79□□□□□ -1.8
VCANP13611 AL451044.1-201ENST00000604867 238 ntBASIC3.79□□□□□ -1.8
VCANP13611 AC079777.1-201ENST00000623836 1953 ntBASIC3.79□□□□□ -1.8
VCANP13611 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VCANP13611 MTCO1P9-201ENST00000505577 1534 ntBASIC3.78□□□□□ -1.8
VCANP13611 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
VCANP13611 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC3.78□□□□□ -1.8
VCANP13611 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 EIF4A1P1-201ENST00000420241 934 ntBASIC3.78□□□□□ -1.8
VCANP13611 HSPE1P27-201ENST00000430808 296 ntBASIC3.78□□□□□ -1.8
VCANP13611 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.78□□□□□ -1.8
VCANP13611 AL139089.1-201ENST00000620372 975 ntBASIC3.78□□□□□ -1.8
VCANP13611 AP002001.2-201ENST00000529025 1469 ntBASIC3.78□□□□□ -1.8
VCANP13611 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.78□□□□□ -1.8
VCANP13611 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.78□□□□□ -1.8
VCANP13611 AL035407.1-201ENST00000429211 571 ntBASIC3.78□□□□□ -1.8
VCANP13611 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.78□□□□□ -1.8
VCANP13611 PSMC1P13-201ENST00000458195 985 ntBASIC3.78□□□□□ -1.8
VCANP13611 RNA5SP249-201ENST00000516127 99 ntBASIC3.78□□□□□ -1.8
VCANP13611 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.78□□□□□ -1.8
VCANP13611 MIR4319-201ENST00000577285 85 ntBASIC3.78□□□□□ -1.8
VCANP13611 AC027216.1-201ENST00000577726 685 ntBASIC3.78□□□□□ -1.8
VCANP13611 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
VCANP13611 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.78□□□□□ -1.8
VCANP13611 AC022893.2-201ENST00000564832 3296 ntBASIC3.78□□□□□ -1.81
VCANP13611 U3.19-201ENST00000390893 196 ntBASIC3.77□□□□□ -1.81
VCANP13611 AL161631.1-201ENST00000417933 486 ntBASIC3.77□□□□□ -1.81
VCANP13611 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.77□□□□□ -1.81
VCANP13611 RANP8-201ENST00000444720 713 ntBASIC3.77□□□□□ -1.81
VCANP13611 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 AC006445.1-201ENST00000491925 405 ntBASIC3.77□□□□□ -1.81
VCANP13611 RAC1P2-201ENST00000511164 579 ntBASIC3.77□□□□□ -1.81
VCANP13611 RNA5SP164-201ENST00000516533 110 ntBASIC3.77□□□□□ -1.81
VCANP13611 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.77□□□□□ -1.81
VCANP13611 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC3.77□□□□□ -1.81
VCANP13611 AC124312.4-201ENST00000605533 310 ntBASIC3.77□□□□□ -1.81
VCANP13611 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC3.77□□□□□ -1.81
VCANP13611 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VCANP13611 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VCANP13611 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 AL445529.1-201ENST00000398713 389 ntBASIC3.77□□□□□ -1.81
VCANP13611 AL513175.1-201ENST00000431492 780 ntBASIC3.77□□□□□ -1.81
VCANP13611 RPS26P4-201ENST00000431743 355 ntBASIC3.77□□□□□ -1.81
VCANP13611 SETP5-201ENST00000437270 562 ntBASIC3.77□□□□□ -1.81
VCANP13611 RPS15AP29-201ENST00000445539 400 ntBASIC3.77□□□□□ -1.81
VCANP13611 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.77□□□□□ -1.81
VCANP13611 AL592295.2-201ENST00000612578 206 ntBASIC3.77□□□□□ -1.81
VCANP13611 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VCANP13611 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VCANP13611 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC3.77□□□□□ -1.81
VCANP13611 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VCANP13611 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
VCANP13611 AC017079.2-201ENST00000416102 485 ntBASIC3.77□□□□□ -1.81
VCANP13611 RPL5P2-201ENST00000429598 854 ntBASIC3.77□□□□□ -1.81
VCANP13611 AC099063.2-201ENST00000446360 662 ntBASIC3.77□□□□□ -1.81
VCANP13611 RPS17P13-201ENST00000448974 407 ntBASIC3.77□□□□□ -1.81
VCANP13611 AL133477.1-201ENST00000457472 514 ntBASIC3.77□□□□□ -1.81
VCANP13611 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.77□□□□□ -1.81
VCANP13611 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC3.77□□□□□ -1.81
VCANP13611 RNA5SP439-201ENST00000617595 124 ntBASIC3.77□□□□□ -1.81
VCANP13611 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.77□□□□□ -1.81
VCANP13611 DHX9P1-201ENST00000436565 3076 ntBASIC3.77□□□□□ -1.81
VCANP13611 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
VCANP13611 AP000432.2-201ENST00000624164 2048 ntBASIC3.77□□□□□ -1.81
VCANP13611 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 AC083837.1-201ENST00000565297 2994 ntBASIC3.76□□□□□ -1.81
VCANP13611 AL080315.1-201ENST00000406055 466 ntBASIC3.76□□□□□ -1.81
VCANP13611 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.76□□□□□ -1.81
VCANP13611 AC097262.1-201ENST00000452559 548 ntBASIC3.76□□□□□ -1.81
VCANP13611 RPL23AP87-202ENST00000573039 466 ntBASIC3.76□□□□□ -1.81
VCANP13611 AC026422.1-201ENST00000623961 452 ntBASIC3.76□□□□□ -1.81
VCANP13611 AL512643.1-201ENST00000635735 524 ntBASIC3.76□□□□□ -1.81
VCANP13611 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC3.76□□□□□ -1.81
VCANP13611 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC3.76□□□□□ -1.81
VCANP13611 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.76□□□□□ -1.81
VCANP13611 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.76□□□□□ -1.81
VCANP13611 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms