Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.51□□□□□ -1.69
PCDHGA1Q9Y5H4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.51□□□□□ -1.69
PCDHGA1Q9Y5H4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PCDHGA1Q9Y5H4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.51□□□□□ -1.69
PCDHGA1Q9Y5H4 IQCB2P-201ENST00000401788 1633 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RNA5SP28-201ENST00000363841 119 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 MIR708-201ENST00000390708 88 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RPS26P8-201ENST00000393490 348 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 HNRNPDP2-201ENST00000406475 478 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AL450992.3-201ENST00000413192 568 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC104333.2-201ENST00000422630 192 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RPS12P10-201ENST00000427031 377 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ETF1P3-201ENST00000430422 1160 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RPS29P17-201ENST00000430795 166 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC023347.2-201ENST00000433994 462 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RNFT1P2-201ENST00000443064 757 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RPL7AP61-201ENST00000443410 636 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ARL5AP2-201ENST00000444698 533 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC114755.5-201ENST00000447760 831 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 NUTF2P3-201ENST00000448540 384 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC104763.1-201ENST00000475274 360 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 TRBV8-2-201ENST00000475637 270 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 RPL30P11-201ENST00000495304 339 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 CR383656.14-201ENST00000551951 406 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AL161713.1-201ENST00000555538 145 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 HMGB2P1-201ENST00000591146 634 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC005776.1-201ENST00000603164 290 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC005034.4-201ENST00000603612 899 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 OR2BH1P-201ENST00000608850 864 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC084824.5-201ENST00000612009 413 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC114781.5-201ENST00000615297 108 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC243756.2-201ENST00000618406 463 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AL445567.2-201ENST00000618935 498 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AL163051.2-201ENST00000618976 735 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AP000843.1-201ENST00000624880 701 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 SEC63P2-201ENST00000503863 1939 ntBASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PCDHGA1Q9Y5H4 AC100871.1-201ENST00000507871 1456 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC046144.1-201ENST00000478559 1853 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AL590762.2-201ENST00000395798 571 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 RPL23AP59-201ENST00000399415 461 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 MTND2P15-201ENST00000418575 892 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 RAD23BP1-201ENST00000421404 1227 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC005189.1-201ENST00000431286 310 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC011998.1-201ENST00000433403 117 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC108463.1-201ENST00000450258 347 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC011037.1-201ENST00000483964 558 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 FTH1P24-201ENST00000503502 462 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 PRELID3BP7-201ENST00000503606 469 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 RN7SL435P-201ENST00000584418 282 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 IPO5P1-202ENST00000600039 287 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 AL392112.1-201ENST00000605115 829 ntBASIC4.49□□□□□ -1.69
PCDHGA1Q9Y5H4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms