Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BMS1P21-201ENST00000634565 365 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.84□□□□□ -1.64
VPS28Q9UK41 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS28Q9UK41 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
VPS28Q9UK41 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS28Q9UK41 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS28Q9UK41 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS28Q9UK41 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS28Q9UK41 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC079741.1-201ENST00000321498 212 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 RNU6-1176P-201ENST00000390955 107 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL355143.1-201ENST00000407101 841 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 RN7SKP267-201ENST00000410381 285 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC119751.6-201ENST00000416712 186 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 ATG4AP1-201ENST00000416893 538 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 E2F6P2-201ENST00000420708 748 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC092447.2-201ENST00000435487 669 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 ARF4P4-201ENST00000439608 520 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL138878.2-201ENST00000440581 1241 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 ARL4AP3-201ENST00000441452 574 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 RNF2P1-201ENST00000442955 1010 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 H2AFZP5-201ENST00000446960 382 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL513533.1-201ENST00000453728 415 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 RPS6P2-201ENST00000454208 705 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 DEFB109F-201ENST00000491870 277 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 RPL23AP72-201ENST00000492447 435 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 OR5H4P-201ENST00000510851 923 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 HMGB1P19-201ENST00000517578 577 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 OR5M2P-201ENST00000529003 936 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC006518.2-201ENST00000542513 940 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC087477.6-201ENST00000559595 843 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 RN7SL652P-201ENST00000577769 300 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 VN1R87P-201ENST00000596706 487 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 BNIP3P27-201ENST00000599991 412 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 MIR6864-201ENST00000617935 70 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL049777.1-201ENST00000622740 518 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 AP000843.1-201ENST00000624880 701 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS28Q9UK41 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS28Q9UK41 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS28Q9UK41 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS28Q9UK41 AL139811.1-201ENST00000424779 2299 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 Z73965.1-201ENST00000623412 2297 ntBASIC4.83□□□□□ -1.64
VPS28Q9UK41 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS28Q9UK41 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC025263.3-201ENST00000622965 1396 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 RNA5SP505-201ENST00000364748 108 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 RNU6-398P-201ENST00000384143 109 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 RNU6-549P-201ENST00000384433 107 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 U3.35-201ENST00000408405 208 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 RNU6-272P-201ENST00000411028 104 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC140479.3-201ENST00000418944 1126 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 VN1R37P-201ENST00000419096 748 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL359265.2-201ENST00000434367 631 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC004865.1-201ENST00000442276 1003 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL592437.1-201ENST00000443781 492 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 RPS29P33-201ENST00000456717 146 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 RNU7-140P-201ENST00000459546 60 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 RN7SL738P-201ENST00000470264 297 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC091959.2-201ENST00000477363 321 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms