Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.71□□□□□ -1.5
NUP88Q99567 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 ZNF321P-202ENST00000550843 495 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 SETP1-201ENST00000556014 845 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC5.71□□□□□ -1.5
NUP88Q99567 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 MIR3912-201ENST00000577566 105 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC209154.1-201ENST00000582156 337 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 MRPS35P3-201ENST00000603189 709 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC105227.2-201ENST00000615075 605 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 AP003485.2-201ENST00000623636 610 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AP000648.2-201ENST00000624182 404 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AF001550.2-201ENST00000636643 217 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 AP005432.1-201ENST00000580891 3485 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 AC133552.1-201ENST00000569988 4007 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AP005901.5-201ENST00000545779 1796 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
NUP88Q99567 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
NUP88Q99567 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
NUP88Q99567 RNU6-707P-201ENST00000364647 95 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
NUP88Q99567 MIR141-201ENST00000384975 95 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC119751.3-201ENST00000399720 670 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 GSTM3P2-201ENST00000412746 530 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC007738.1-201ENST00000413892 348 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC069213.2-201ENST00000420238 366 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.7□□□□□ -1.5
NUP88Q99567 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 FGF7P5-201ENST00000441829 291 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 SLC25A18P1-201ENST00000449385 454 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC104306.1-201ENST00000449702 371 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 NDUFA12P1-201ENST00000455914 406 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 RPL5P22-201ENST00000480199 884 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.7□□□□□ -1.5
NUP88Q99567 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 RN7SKP276-201ENST00000516242 268 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 AP001317.1-201ENST00000531194 960 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.7□□□□□ -1.5
NUP88Q99567 LSM3P2-201ENST00000551246 273 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC022662.1-201ENST00000580252 331 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC068790.4-201ENST00000602474 263 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AL139344.1-201ENST00000605228 195 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 AC097065.2-201ENST00000608159 533 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 MIR6780A-201ENST00000615089 68 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AC022509.4-201ENST00000621404 572 ntBASIC5.7□□□□□ -1.5
NUP88Q99567 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
NUP88Q99567 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NUP88Q99567 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 AC092079.1-201ENST00000558620 1985 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 TTC39DP-201ENST00000416781 1688 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC025263.3-201ENST00000622965 1396 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC083843.2-201ENST00000568248 6253 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.69□□□□□ -1.5
NUP88Q99567 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC079741.1-201ENST00000321498 212 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 RNU6-1214P-201ENST00000363650 109 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 U3.30-201ENST00000391308 210 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 RPS16P5-201ENST00000406501 404 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms