Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 SETD6P1-201ENST00000444575 317 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AL031658.2-201ENST00000616850 651 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AC011503.2-201ENST00000594230 1500 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AL034403.1-201ENST00000399414 885 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 RPS26P2-201ENST00000440331 348 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 RPS15AP29-201ENST00000445539 400 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 SAMMSON-213ENST00000641336 1521 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 MAPK10-372ENST00000641954 3413 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 RPL21P110-201ENST00000433345 446 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AL445433.1-201ENST00000457507 257 ntBASIC3.63□□□□□ -1.83
VPS13AQ96RL7 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 AC234772.1-201ENST00000377927 937 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 NANOGNBP1-201ENST00000448444 480 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 RAC1P2-201ENST00000511164 579 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 CYCSP28-201ENST00000534284 321 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 NPM1P5-201ENST00000557228 838 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 AL136131.1-201ENST00000406079 803 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 VN1R25P-201ENST00000443385 738 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 RPL21P11-201ENST00000461458 483 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 COX6CP4-201ENST00000605798 228 ntBASIC3.62□□□□□ -1.83
VPS13AQ96RL7 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS13AQ96RL7 Z95331.1-201ENST00000623075 23112 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 VTI1BP4-201ENST00000427516 527 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC016839.1-201ENST00000578162 867 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 SNORA48.8-201ENST00000391324 134 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC087276.1-201ENST00000529659 480 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC063950.1-201ENST00000552036 308 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 U4.6-201ENST00000621618 127 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AP001153.1-201ENST00000641024 338 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC024341.1-201ENST00000526444 1552 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC005002.1-201ENST00000447458 540 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 PHBP17-201ENST00000528576 541 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 MIR3162-201ENST00000581818 82 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 AC008833.1-201ENST00000611633 691 ntBASIC3.61□□□□□ -1.83
VPS13AQ96RL7 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC3.61□□□□□ -1.83
VPS13AQ96RL7 Z95114.1-201ENST00000624264 14574 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 BTBD10P1-201ENST00000549824 1352 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms