Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AL133393.1-201ENST00000603277 287 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 SUGT1P3-202ENST00000604259 383 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC114878.2-201ENST00000604863 1251 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 STARD13-AS-224ENST00000608496 787 ntTSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 OR2BH1P-201ENST00000608850 864 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 WWOX-217ENST00000620008 450 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 LRRC77P-213ENST00000637727 880 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 ZNRD1ASP-221ENST00000637794 1074 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 ELL2P4-201ENST00000446870 1376 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL353743.1-202ENST00000431724 1695 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 RNA5SP443-201ENST00000363083 132 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 HMGB1P10-201ENST00000395823 563 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 SNRPFP1-201ENST00000414761 252 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 HIGD1AP4-201ENST00000430194 280 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 RPEP4-201ENST00000437636 602 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 RPL21P2-201ENST00000440049 481 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AMYP1-201ENST00000440059 1023 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 VN1R48P-201ENST00000448149 1036 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 CDKN2AIPNLP1-201ENST00000460287 302 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC091564.1-201ENST00000464563 479 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC084198.1-201ENST00000477747 402 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC112484.3-201ENST00000505910 329 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 RNA5SP179-201ENST00000517284 121 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL110118.1-201ENST00000553543 400 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL157394.1-201ENST00000562983 1224 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC010735.1-201ENST00000567305 1026 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC010653.1-201ENST00000571108 881 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 MIR4691-201ENST00000583764 85 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC011447.4-201ENST00000587562 111 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC079315.1-201ENST00000602952 623 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL590240.3-201ENST00000621416 943 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AC084035.1-201ENST00000634543 607 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 AL732372.2-225ENST00000642124 456 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 DCAF13P1-201ENST00000495256 1330 ntBASIC2.32□□□□□ -2.04
LINC00643Q86TS7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC2.32□□□□□ -2.04
LINC00643Q86TS7 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AL118496.1-201ENST00000440201 1812 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RNA5SP295-201ENST00000362655 121 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 SMIM30-201ENST00000397764 1070 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AL513174.1-201ENST00000423182 629 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RHOT1P3-201ENST00000436571 331 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RPS13P2-201ENST00000437890 455 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC016831.4-201ENST00000438302 307 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC074367.1-201ENST00000438685 1125 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RPS26P41-201ENST00000450370 284 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms