Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 LYZ-203ENST00000549690 669 ntTSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL122125.1-201ENST00000616999 600 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AF001550.2-201ENST00000636643 217 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 LINC01739-205ENST00000641890 573 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 MUC2-202ENST00000613187 4845 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AP000526.1-201ENST00000603308 1388 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC019072.1-201ENST00000604535 1551 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC073429.2-201ENST00000569694 1444 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-553P-201ENST00000364047 96 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 Y_RNA.201-201ENST00000364052 96 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AL645733.1-201ENST00000402250 217 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 MIR1182-201ENST00000408363 97 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 PPIAP17-201ENST00000438507 471 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC073850.1-201ENST00000449243 255 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC104306.1-201ENST00000449702 371 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 TPMTP4-201ENST00000450749 678 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC092754.2-201ENST00000463506 460 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 MTND4LP3-201ENST00000468320 276 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 RPS27P23-201ENST00000487608 251 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC109462.1-201ENST00000491087 368 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-1225P-201ENST00000516336 65 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 RN7SKP283-201ENST00000517197 270 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC024940.3-201ENST00000538551 316 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 HIGD1AP17-201ENST00000554576 276 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC093591.2-201ENST00000565254 3843 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 DPRXP4-201ENST00000578053 568 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 VN1R90P-201ENST00000595717 726 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC068790.2-201ENST00000602601 557 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC146944.4-201ENST00000602697 718 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC095055.1-201ENST00000603472 1113 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC072039.2-201ENST00000608883 439 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC097505.1-201ENST00000610199 565 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AL139418.1-201ENST00000613613 177 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC073530.2-201ENST00000623987 261 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC010608.2-201ENST00000624830 470 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 AC092079.1-201ENST00000558620 1985 ntBASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
PTCHD3Q3KNS1 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms