Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU1-103P-201ENST00000516502 125 ntBASIC6.29□□□□□ -1.4
CUX1P39880 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC6.29□□□□□ -1.4
CUX1P39880 MEG8-215ENST00000555354 469 ntTSL 3 BASIC6.29□□□□□ -1.4
CUX1P39880 GTF2IP8-201ENST00000560687 584 ntBASIC6.29□□□□□ -1.4
CUX1P39880 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.29□□□□□ -1.4
CUX1P39880 AL137843.1-201ENST00000605078 385 ntBASIC6.29□□□□□ -1.4
CUX1P39880 AC011816.2-201ENST00000607089 556 ntBASIC6.29□□□□□ -1.4
CUX1P39880 AL139089.1-201ENST00000620372 975 ntBASIC6.29□□□□□ -1.4
CUX1P39880 MIR7154-201ENST00000620673 73 ntBASIC6.29□□□□□ -1.4
CUX1P39880 AP000553.6-201ENST00000641242 118 ntBASIC6.29□□□□□ -1.4
CUX1P39880 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC6.29□□□□□ -1.4
CUX1P39880 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CUX1P39880 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CUX1P39880 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC6.28□□□□□ -1.4
CUX1P39880 RPL6P9-201ENST00000466502 859 ntBASIC6.28□□□□□ -1.4
CUX1P39880 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.28□□□□□ -1.4
CUX1P39880 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC6.28□□□□□ -1.4
CUX1P39880 AC022146.1-201ENST00000595307 847 ntBASIC6.28□□□□□ -1.4
CUX1P39880 AC133552.5-201ENST00000604266 540 ntBASIC6.28□□□□□ -1.4
CUX1P39880 AC006077.1-201ENST00000604746 343 ntBASIC6.28□□□□□ -1.4
CUX1P39880 MIR8057-201ENST00000620957 69 ntBASIC6.28□□□□□ -1.4
CUX1P39880 AC024023.1-201ENST00000624530 922 ntBASIC6.28□□□□□ -1.4
CUX1P39880 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC6.28□□□□□ -1.4
CUX1P39880 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
CUX1P39880 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
CUX1P39880 NAMPTP1-201ENST00000440465 2514 ntBASIC6.27□□□□□ -1.41
CUX1P39880 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.27□□□□□ -1.41
CUX1P39880 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CUX1P39880 MIR128-1-201ENST00000384921 82 ntBASIC6.27□□□□□ -1.41
CUX1P39880 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC6.27□□□□□ -1.41
CUX1P39880 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC6.27□□□□□ -1.41
CUX1P39880 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC6.27□□□□□ -1.41
CUX1P39880 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC6.27□□□□□ -1.41
CUX1P39880 DCLRE1CP1-201ENST00000454630 470 ntBASIC6.27□□□□□ -1.41
CUX1P39880 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.27□□□□□ -1.41
CUX1P39880 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CUX1P39880 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC6.27□□□□□ -1.41
CUX1P39880 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.27□□□□□ -1.41
CUX1P39880 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CUX1P39880 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC6.27□□□□□ -1.41
CUX1P39880 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC6.27□□□□□ -1.41
CUX1P39880 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC6.27□□□□□ -1.41
CUX1P39880 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
CUX1P39880 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC6.27□□□□□ -1.41
CUX1P39880 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC6.27□□□□□ -1.41
CUX1P39880 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.27□□□□□ -1.41
CUX1P39880 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CUX1P39880 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CUX1P39880 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC6.27□□□□□ -1.41
CUX1P39880 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC6.27□□□□□ -1.41
CUX1P39880 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CUX1P39880 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
CUX1P39880 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
CUX1P39880 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC6.26□□□□□ -1.41
CUX1P39880 AC234772.1-201ENST00000377927 937 ntBASIC6.26□□□□□ -1.41
CUX1P39880 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 DYNLL1P7-201ENST00000429273 258 ntBASIC6.26□□□□□ -1.41
CUX1P39880 LEF1-218ENST00000512172 598 ntTSL 2 BASIC6.26□□□□□ -1.41
CUX1P39880 RNU6-513P-201ENST00000516104 104 ntBASIC6.26□□□□□ -1.41
CUX1P39880 OR5M7P-201ENST00000526140 972 ntBASIC6.26□□□□□ -1.41
CUX1P39880 AC008011.1-201ENST00000545989 227 ntBASIC6.26□□□□□ -1.41
CUX1P39880 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC6.26□□□□□ -1.41
CUX1P39880 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC6.26□□□□□ -1.41
CUX1P39880 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
CUX1P39880 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 CDY3P-201ENST00000454543 1618 ntBASIC6.26□□□□□ -1.41
CUX1P39880 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
CUX1P39880 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 AC104849.1-201ENST00000462623 405 ntBASIC6.25□□□□□ -1.41
CUX1P39880 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC6.25□□□□□ -1.41
CUX1P39880 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
CUX1P39880 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC6.25□□□□□ -1.41
CUX1P39880 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC6.25□□□□□ -1.41
CUX1P39880 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC6.25□□□□□ -1.41
CUX1P39880 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 CFL2-206ENST00000556161 546 ntTSL 4 BASIC6.25□□□□□ -1.41
CUX1P39880 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.25□□□□□ -1.41
CUX1P39880 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 AL121890.2-201ENST00000617644 465 ntBASIC6.25□□□□□ -1.41
CUX1P39880 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 AC010266.2-201ENST00000564741 3255 ntBASIC6.25□□□□□ -1.41
CUX1P39880 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 MAPK10-303ENST00000641324 3959 ntBASIC6.25□□□□□ -1.41
CUX1P39880 HIST1H2APS3-201ENST00000403259 134 ntBASIC6.25□□□□□ -1.41
CUX1P39880 RNA5SP120-201ENST00000410900 112 ntBASIC6.25□□□□□ -1.41
CUX1P39880 AC011742.1-201ENST00000431448 434 ntBASIC6.25□□□□□ -1.41
CUX1P39880 SETP4-201ENST00000455717 868 ntBASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms