Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MIR4513-201ENST00000581077 86 ntBASIC4.69□□□□□ -1.66
SCN4AP35499 AC012417.1-201ENST00000582307 1039 ntBASIC4.69□□□□□ -1.66
SCN4AP35499 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.69□□□□□ -1.66
SCN4AP35499 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.69□□□□□ -1.66
SCN4AP35499 MTCO1P46-201ENST00000451639 1491 ntBASIC4.69□□□□□ -1.66
SCN4AP35499 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.69□□□□□ -1.66
SCN4AP35499 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.69□□□□□ -1.66
SCN4AP35499 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SCN4AP35499 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SCN4AP35499 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.68□□□□□ -1.66
SCN4AP35499 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.68□□□□□ -1.66
SCN4AP35499 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.68□□□□□ -1.66
SCN4AP35499 RPL23AP94-201ENST00000512518 302 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.68□□□□□ -1.66
SCN4AP35499 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.68□□□□□ -1.66
SCN4AP35499 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.68□□□□□ -1.66
SCN4AP35499 GNRHR2P1-201ENST00000555315 631 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
SCN4AP35499 AC025627.2-201ENST00000576220 160 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 AL137843.1-201ENST00000605078 385 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 AC011816.2-201ENST00000607089 556 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 AC090246.1-201ENST00000616499 426 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 AC023509.5-201ENST00000617434 807 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 AC015722.2-201ENST00000622210 551 ntBASIC4.68□□□□□ -1.66
SCN4AP35499 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.68□□□□□ -1.66
SCN4AP35499 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.68□□□□□ -1.66
SCN4AP35499 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.68□□□□□ -1.66
SCN4AP35499 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.68□□□□□ -1.66
SCN4AP35499 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.68□□□□□ -1.66
SCN4AP35499 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.68□□□□□ -1.66
SCN4AP35499 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SCN4AP35499 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.68□□□□□ -1.66
SCN4AP35499 AL035423.1-201ENST00000420331 213 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC012158.1-204ENST00000483430 465 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC011270.1-201ENST00000558606 583 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC073530.2-201ENST00000623987 261 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SCN4AP35499 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SCN4AP35499 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SCN4AP35499 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SCN4AP35499 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SCN4AP35499 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SCN4AP35499 ZNF602P-201ENST00000405929 924 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AL390879.2-203ENST00000426943 1121 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 CYCSP4-201ENST00000429682 331 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SCN4AP35499 RPS27AP15-201ENST00000447672 466 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.67□□□□□ -1.66
SCN4AP35499 RN7SKP83-201ENST00000516512 178 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 RNA5SP164-201ENST00000516533 110 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC069240.1-201ENST00000548774 375 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC063950.1-201ENST00000552036 308 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.67□□□□□ -1.66
SCN4AP35499 AC104662.1-201ENST00000604448 511 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 AC026368.1-201ENST00000614934 690 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.67□□□□□ -1.66
SCN4AP35499 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.67□□□□□ -1.66
SCN4AP35499 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SCN4AP35499 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SCN4AP35499 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.66□□□□□ -1.66
SCN4AP35499 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
SCN4AP35499 OR2X1P-201ENST00000421144 687 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 AL391219.1-201ENST00000422570 483 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 RPL5P24-201ENST00000463742 885 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 RPL21P6-201ENST00000479171 504 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 SNORA70.17-201ENST00000516449 133 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.66□□□□□ -1.66
SCN4AP35499 AL451044.1-201ENST00000604867 238 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 AC135507.2-201ENST00000612443 309 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 MIR6852-201ENST00000621699 66 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 AC019278.1-201ENST00000623516 479 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SCN4AP35499 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SCN4AP35499 AC093591.2-201ENST00000565254 3843 ntBASIC4.66□□□□□ -1.66
SCN4AP35499 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.66
SCN4AP35499 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.65□□□□□ -1.66
SCN4AP35499 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
SCN4AP35499 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms