Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 JKAMPP1-201ENST00000413804 919 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.41□□□□□ -1.7
PTPN4P29074 MTND4P24-201ENST00000424002 397 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 FAR1P1-201ENST00000427163 934 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PTPN4P29074 RPL34P26-201ENST00000445636 354 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.41□□□□□ -1.7
PTPN4P29074 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.41□□□□□ -1.7
PTPN4P29074 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 CABYRP1-201ENST00000465493 1045 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 SYT14P1-201ENST00000481459 721 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.41□□□□□ -1.7
PTPN4P29074 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 VWA8P1-201ENST00000510889 176 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AC093840.1-201ENST00000511599 336 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 NDUFB4P12-201ENST00000513465 390 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.41□□□□□ -1.7
PTPN4P29074 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.41□□□□□ -1.7
PTPN4P29074 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.41□□□□□ -1.7
PTPN4P29074 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.41□□□□□ -1.7
PTPN4P29074 AC027176.2-201ENST00000559166 746 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 LINC00557-201ENST00000563184 1279 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AC084783.1-201ENST00000565846 910 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.41□□□□□ -1.7
PTPN4P29074 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 AC090181.2-201ENST00000602975 672 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AL133338.2-201ENST00000604292 736 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 MIR7973-1-201ENST00000614683 76 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 AL356490.1-201ENST00000623079 479 ntBASIC4.41□□□□□ -1.7
PTPN4P29074 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PTPN4P29074 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PTPN4P29074 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
PTPN4P29074 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PTPN4P29074 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
PTPN4P29074 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
PTPN4P29074 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
PTPN4P29074 NXPH1-205ENST00000602349 1953 ntBASIC4.4□□□□□ -1.7
PTPN4P29074 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
PTPN4P29074 AL391684.1-202ENST00000641293 1636 ntBASIC4.4□□□□□ -1.7
PTPN4P29074 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
PTPN4P29074 RNU6-317P-201ENST00000384031 107 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 RNU6-40P-201ENST00000384254 107 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN4P29074 RNU4-74P-201ENST00000411280 161 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AL450992.3-201ENST00000413192 568 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AL592293.2-201ENST00000422292 996 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 MTND2P11-201ENST00000423638 648 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 CHIAP3-201ENST00000423668 1133 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 IPMKP1-201ENST00000425988 855 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AL732292.1-201ENST00000426692 226 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 CBX1P4-201ENST00000439415 457 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC007000.2-201ENST00000442564 487 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AL935212.3-201ENST00000450729 284 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 ISCUP1-201ENST00000454451 448 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN4P29074 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN4P29074 AC098799.3-201ENST00000506095 438 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 MTCO1P31-201ENST00000506355 492 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN4P29074 RN7SKP122-201ENST00000515923 296 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC090281.1-201ENST00000523019 276 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AP001781.1-201ENST00000530977 207 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN4P29074 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN4P29074 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN4P29074 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN4P29074 MIR548Y-201ENST00000582739 110 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 NF1P5-201ENST00000588287 448 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN4P29074 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN4P29074 MIR432-201ENST00000606207 94 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC055764.2-201ENST00000610089 670 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AL035461.2-201ENST00000619201 524 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AP005019.3-201ENST00000620418 560 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC103858.2-201ENST00000621471 543 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 AC015726.3-201ENST00000624501 418 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 U3.53-201ENST00000628922 216 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN4P29074 MIR6830-201ENST00000636015 70 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 CCT8P1-201ENST00000413611 1657 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.71
PTPN4P29074 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN4P29074 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN4P29074 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
PTPN4P29074 AC018555.1-201ENST00000567548 1980 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.4□□□□□ -1.71
PTPN4P29074 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN4P29074 AC108467.2-201ENST00000617640 1597 ntBASIC4.4□□□□□ -1.71
PTPN4P29074 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
PTPN4P29074 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
PTPN4P29074 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 RNA5SP388-201ENST00000362584 119 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 RNA5SP307-201ENST00000362863 116 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms