Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL731532.2-201ENST00000623542 1953 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AP005901.5-201ENST00000545779 1796 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 NACA3P-201ENST00000359690 648 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 SNORA17.1-201ENST00000362945 126 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 RNU6-225P-201ENST00000384613 103 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 RAP1BP1-201ENST00000412709 553 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 COX6CP17-201ENST00000421389 185 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 GAPDHP49-201ENST00000421421 961 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL009174.1-201ENST00000426577 416 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL360081.1-201ENST00000428299 555 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 MTND1P32-201ENST00000433043 938 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC073143.1-201ENST00000436316 395 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL133217.1-201ENST00000450980 425 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 NECAP1P2-201ENST00000455668 727 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 GAPDHP39-201ENST00000481866 979 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 BET1P1-201ENST00000482276 359 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC126121.1-201ENST00000482313 553 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC092747.2-201ENST00000545069 983 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC137768.1-201ENST00000549998 553 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL442163.2-201ENST00000553912 710 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 PIGPP4-201ENST00000584447 307 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC069307.1-201ENST00000602820 447 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC055764.2-201ENST00000610089 670 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC100847.1-201ENST00000611316 481 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC092608.3-201ENST00000625017 386 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC103706.2-201ENST00000638080 240 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 AC000374.1-201ENST00000434698 1745 ntBASIC4.97□□□□□ -1.61
VPS4AQ9UN37 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS4AQ9UN37 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.96□□□□□ -1.61
VPS4AQ9UN37 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.96□□□□□ -1.61
VPS4AQ9UN37 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 MIR133B-201ENST00000362210 119 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 U3.2-201ENST00000362981 210 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 Y_RNA.169-201ENST00000363745 96 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 RNU6-560P-201ENST00000364007 108 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 BMS1P3-201ENST00000372011 932 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 OR1L1-202ENST00000373686 1083 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 MIR525-201ENST00000384978 85 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 MIR105-1-201ENST00000385222 81 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 VDAC2P1-201ENST00000399358 958 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 RN7SKP126-201ENST00000411143 300 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC090960.1-201ENST00000421072 306 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 MTCO3P21-201ENST00000430791 643 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC091390.1-201ENST00000433904 331 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC092473.1-201ENST00000441098 221 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 BX248409.1-201ENST00000455497 255 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 snoU13.20-201ENST00000459180 104 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AL672167.3-201ENST00000465951 960 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC092324.1-201ENST00000468671 324 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 TRBV8-2-201ENST00000475637 270 ntBASIC4.96□□□□□ -1.62
VPS4AQ9UN37 AC090114.3-201ENST00000479267 829 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms