Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RNU6-1309P-201ENST00000363305 108 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 Y_RNA.414-201ENST00000384011 101 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RNU6-38P-201ENST00000384085 107 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PRELID1P1-201ENST00000403549 660 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RPL31P45-201ENST00000419532 356 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 SNRPEP4-201ENST00000435815 279 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC012075.1-201ENST00000436549 580 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RNU7-182P-201ENST00000459009 62 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RNU6-333P-201ENST00000459117 107 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RN7SL221P-201ENST00000466190 281 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC026336.1-201ENST00000466577 351 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AL049714.1-201ENST00000466686 347 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PFN1P6-201ENST00000476786 399 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC004062.1-201ENST00000509926 645 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RN7SKP219-201ENST00000516825 296 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AP004609.2-201ENST00000532177 190 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PCNAP4-201ENST00000532690 730 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC244100.1-202ENST00000621554 382 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 LINC01613-201ENST00000561476 2780 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 HSPA8P14-201ENST00000552265 1805 ntBASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RNU6-97P-201ENST00000363387 104 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 U3.12-201ENST00000364498 214 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RNA5SP485-201ENST00000365053 119 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 UBBP1-201ENST00000392399 473 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RNU2-29P-201ENST00000410423 189 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 OR6C66P-201ENST00000414917 930 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RPS3AP52-201ENST00000435639 297 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 GAPDHP59-201ENST00000435908 267 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 TIMM9P1-201ENST00000436122 256 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 NANOGP10-201ENST00000453325 895 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC083904.1-201ENST00000487828 231 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RN7SL362P-201ENST00000494228 267 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RPL39P5-202ENST00000512505 151 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 RNA5SP441-201ENST00000516809 88 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC013283.1-201ENST00000557282 492 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 MIR4502-201ENST00000580432 81 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC060771.1-201ENST00000582031 164 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC011477.5-201ENST00000586571 259 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 CTHRC1P1-201ENST00000605383 469 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 AC007546.1-201ENST00000619452 559 ntBASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 TTK-211ENST00000627129 240 ntTSL 5 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIMD1Q9UGP4 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms