Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC073055.1-201ENST00000456901 1621 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AL122126.1-201ENST00000546905 1318 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 OR4K15-201ENST00000305051 1216 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 RN7SKP115-201ENST00000363177 317 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AP000580.1-201ENST00000404439 358 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 RPL31P2-201ENST00000413849 377 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC004074.1-201ENST00000421810 1063 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC010733.1-201ENST00000451515 401 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 TPT1P3-201ENST00000492841 512 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 RPL5P23-201ENST00000496040 868 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC093755.1-201ENST00000512950 1023 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 OR7H2P-201ENST00000513483 306 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 CR383656.6-201ENST00000550518 394 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AL352979.3-201ENST00000553515 247 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 RN7SL652P-201ENST00000577769 300 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC113194.1-201ENST00000606037 500 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 OR7A19P-201ENST00000608051 733 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC004825.2-201ENST00000616634 455 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC068620.4-201ENST00000636730 1182 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AP001642.1-201ENST00000624727 2117 ntBASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CHMP4AQ9BY43 AC107081.3-201ENST00000612715 2034 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC095050.2-201ENST00000510748 1458 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AL590762.2-201ENST00000395798 571 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 RNU6-272P-201ENST00000411028 104 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AL513175.1-201ENST00000431492 780 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 NMNAT1P2-201ENST00000435192 860 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC073264.2-201ENST00000448886 166 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC087385.1-201ENST00000475062 312 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC073522.1-201ENST00000483312 377 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC073358.1-201ENST00000505671 684 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 IGLVIV-66-1-201ENST00000521832 460 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 MTND2P26-201ENST00000528255 1029 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC005868.1-201ENST00000536421 331 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC005255.1-201ENST00000593748 216 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 AC068790.7-201ENST00000602347 528 ntBASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP4AQ9BY43 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CHMP4AQ9BY43 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CHMP4AQ9BY43 AP001002.1-201ENST00000625148 1513 ntBASIC6.09□□□□□ -1.44
CHMP4AQ9BY43 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CHMP4AQ9BY43 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CHMP4AQ9BY43 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC6.09□□□□□ -1.44
CHMP4AQ9BY43 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AL132640.2-201ENST00000559968 1698 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 RNA5SP167-201ENST00000365461 116 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 CTSL3P-202ENST00000412179 788 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC119751.6-201ENST00000416712 186 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC090142.1-201ENST00000465776 462 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC015724.1-201ENST00000478577 156 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC008628.1-201ENST00000508663 265 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC091868.1-201ENST00000508746 304 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AP006289.1-201ENST00000538089 277 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms