Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC009951.1-201ENST00000623674 2614 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AL672167.1-204ENST00000641875 3017 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RNU6-1005P-201ENST00000384519 107 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 SDHCP2-201ENST00000398565 501 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 TMSB10P2-201ENST00000416049 131 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RPL7P57-201ENST00000423238 740 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC115285.1-201ENST00000424879 736 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RPS29P17-201ENST00000430795 166 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 MTND6P18-201ENST00000439477 513 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RNF2P1-201ENST00000442955 1010 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RPL7AP52-201ENST00000458096 790 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RPL7P48-201ENST00000461513 746 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RN7SL810P-201ENST00000493031 276 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AP000827.1-201ENST00000527814 258 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AP003717.3-201ENST00000544832 1180 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 GLRXP2-201ENST00000555594 321 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC011477.5-201ENST00000586571 259 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC010857.1-201ENST00000606398 594 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AP000240.1-201ENST00000609910 452 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 LINC01808-202ENST00000641680 1116 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 DHX9P1-201ENST00000436565 3076 ntBASIC4.42□□□□□ -1.7
CCDC3Q9BQI4 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AP000756.2-201ENST00000624168 2567 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC135352.1-201ENST00000506173 1418 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 RNU6-481P-201ENST00000384194 107 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AL355615.1-201ENST00000406187 641 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC069282.1-201ENST00000411911 526 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC011933.1-201ENST00000413334 321 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC116533.1-201ENST00000459748 321 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC020898.1-201ENST00000474167 787 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 RN7SL809P-201ENST00000482040 297 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC108471.1-201ENST00000513977 287 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 SCARNA1-201ENST00000517138 166 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 OR8G5-201ENST00000524943 1041 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 OR5AK3P-201ENST00000527486 1297 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AP003066.2-201ENST00000529375 555 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 BNIP3P5-201ENST00000562290 498 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 MIR3160-1-201ENST00000577972 85 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AP003117.1-201ENST00000602771 554 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC023043.4-201ENST00000612081 449 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 MIR8069-1-201ENST00000616627 86 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC131238.1-201ENST00000617135 328 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 MIR8069-2-201ENST00000621412 86 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms