Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 SNORD66.1-201ENST00000391230 76 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 RNA5SP293-201ENST00000410527 113 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 RPL23AP65-201ENST00000475608 468 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC084198.1-201ENST00000477747 402 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 RNU4-35P-201ENST00000362588 141 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC069240.1-201ENST00000548774 375 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC084036.1-201ENST00000609190 508 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC007656.2-201ENST00000624902 4547 ntBASIC3.66□□□□□ -1.82
VPS13AQ96RL7 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 AC009506.2-201ENST00000420635 840 ntBASIC3.65□□□□□ -1.82
VPS13AQ96RL7 Y_RNA.638-201ENST00000459374 113 ntBASIC3.65□□□□□ -1.82
VPS13AQ96RL7 AC139783.2-201ENST00000504847 1145 ntBASIC3.65□□□□□ -1.82
VPS13AQ96RL7 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 AC104984.5-201ENST00000586878 94 ntBASIC3.65□□□□□ -1.82
VPS13AQ96RL7 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
VPS13AQ96RL7 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 OR56A5-201ENST00000340110 738 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 RPL5P18-201ENST00000406671 891 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC245054.1-201ENST00000420944 258 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC026784.1-201ENST00000507986 352 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 TUG1_1.1-201ENST00000610654 145 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC093698.1-201ENST00000423843 571 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC113192.3-201ENST00000529152 742 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AL121576.1-201ENST00000556055 276 ntBASIC3.65□□□□□ -1.83
VPS13AQ96RL7 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS13AQ96RL7 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RNA5SP50-201ENST00000363731 107 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 AC093663.1-201ENST00000497190 394 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RNU2-27P-201ENST00000516185 142 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RNA5SP230-201ENST00000517039 122 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 AC008802.1-201ENST00000519121 791 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 EIF4A1P1-201ENST00000420241 934 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RFPL4AP5-201ENST00000514977 504 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RNU1-41P-201ENST00000516161 162 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RNU1-48P-201ENST00000516400 162 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS13AQ96RL7 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.63□□□□□ -1.83
VPS13AQ96RL7 AL451142.2-201ENST00000429076 2090 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms