Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC017037.1-201ENST00000508460 471 ntBASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 AC022882.1-201ENST00000532142 501 ntBASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 AC010608.2-201ENST00000624830 470 ntBASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
SHROOM3Q8TF72 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 SNORA73.2-201ENST00000364946 201 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AL590806.1-201ENST00000415818 853 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 HMGB1P37-201ENST00000439613 609 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 GNRHR2P1-201ENST00000555315 631 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AC090312.1-201ENST00000580637 348 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 MIR3200-201ENST00000580767 85 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AC124312.6-202ENST00000623624 418 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 ZNF285B-201ENST00000561698 1767 ntBASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHROOM3Q8TF72 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 SNORA5A-201ENST00000384111 134 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RN7SKP156-201ENST00000410308 342 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 OR6C71P-201ENST00000432580 913 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RPS3AP6-201ENST00000484430 795 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RNU6-352P-201ENST00000516908 107 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 GTF2IP22-201ENST00000554443 182 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 AL137849.1-201ENST00000604767 169 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 OR2BH1P-201ENST00000608850 864 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RLIMP1-201ENST00000339626 1680 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RNU6-673P-201ENST00000365084 104 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RAB9AP3-201ENST00000412737 573 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 HSFY1P1-201ENST00000423928 1178 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 RAB9AP1-201ENST00000449393 573 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 IGHV3-63-201ENST00000518422 341 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 AC008802.1-201ENST00000519121 791 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 AC008011.1-201ENST00000545989 227 ntBASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHROOM3Q8TF72 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC073346.2-201ENST00000624724 2058 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 Y_RNA.111-201ENST00000363248 100 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 RNA5SP130-201ENST00000364431 114 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 RNA5SP513-201ENST00000364648 118 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 RNU11-4P-201ENST00000391149 133 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 TRIM60P17-201ENST00000415181 719 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 CYCSP32-201ENST00000440548 321 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 NPM1P47-201ENST00000560843 856 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC007599.1-201ENST00000568688 1174 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 MIR3653-201ENST00000625572 110 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 AC097504.1-201ENST00000515103 2415 ntBASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHROOM3Q8TF72 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms