Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC009237.3-203ENST00000442128 3551 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 MTHFD1P1-201ENST00000413059 2764 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RPL12P13-201ENST00000310055 497 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RN7SKP95-201ENST00000362860 303 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RNU6-1188P-201ENST00000363795 107 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 Y_RNA.373-201ENST00000365600 103 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC004386.1-201ENST00000393214 761 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AL157702.1-201ENST00000398764 426 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RPL10P10-201ENST00000403509 664 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RN7SKP108-201ENST00000411367 328 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RPL37P10-201ENST00000412884 288 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RPEP2-201ENST00000432149 701 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC104306.1-201ENST00000449702 371 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC013470.1-201ENST00000453438 462 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC104308.1-201ENST00000454621 333 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 PSAT1P4-201ENST00000466500 526 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AP002453.1-201ENST00000492327 668 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RNA5SP206-201ENST00000516703 121 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AL389895.1-201ENST00000554127 252 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AL359999.1-201ENST00000604513 294 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC004890.3-201ENST00000605566 1095 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC008115.3-201ENST00000614874 549 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AC005899.7-201ENST00000618199 588 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 MIR6085-201ENST00000618314 110 ntBASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.77□□□□□ -1.33
NPAS3Q8IXF0 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AL117339.4-201ENST00000608335 7063 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC023245.2-201ENST00000530760 2978 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC007993.1-201ENST00000621298 2430 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 COX6B1P3-201ENST00000312310 260 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 ENSAP3-201ENST00000312710 333 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 RNU6-1115P-201ENST00000362490 106 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 SNORA20.1-201ENST00000364790 130 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 SNORD113-1-201ENST00000365321 69 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 Y_RNA.389-201ENST00000383924 113 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 ATP5HP3-201ENST00000396994 486 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 RPL7AP14-201ENST00000424041 802 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 RPS17P8-201ENST00000434525 335 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 RPS15AP9-201ENST00000439856 381 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 BTF3P5-201ENST00000457252 467 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC009963.3-201ENST00000458090 486 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 RPSAP39-201ENST00000467439 883 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC017015.1-201ENST00000477387 286 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 Vault.3-201ENST00000516676 95 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 MIR544B-201ENST00000582372 78 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 MIR5690-201ENST00000583739 73 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC078899.3-201ENST00000599065 212 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 AC034229.6-201ENST00000623704 224 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms