Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-666P-201ENST00000363499 107 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 RNU6-1279P-201ENST00000383917 103 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 RN7SKP167-201ENST00000411047 285 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AL139095.3-201ENST00000419672 1203 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC073508.1-201ENST00000428866 656 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 CNOT7P1-201ENST00000429006 852 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 RPS20P1-201ENST00000434853 354 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 RPS27AP15-201ENST00000447672 466 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC017099.1-201ENST00000448261 1028 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC239809.1-201ENST00000450470 217 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AL353718.1-201ENST00000451028 517 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 CLIC4P1-201ENST00000453177 535 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 DHFRP3-201ENST00000455595 559 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 EIF4A2P4-201ENST00000458691 1196 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC108729.2-201ENST00000476543 840 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 RN7SL459P-201ENST00000481078 302 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC108120.2-201ENST00000512973 294 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 IGLVIV-65-201ENST00000517313 360 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC090151.1-201ENST00000520784 730 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 OR5M7P-201ENST00000526140 972 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 CR383656.6-201ENST00000550518 394 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC020914.4-201ENST00000597690 277 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC015849.2-201ENST00000605738 409 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 Z98200.1-201ENST00000607298 470 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AL023583.1-201ENST00000607518 1143 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AL391834.1-201ENST00000609609 560 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC019193.2-201ENST00000610012 634 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 MIR6820-201ENST00000611508 62 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AL353726.1-201ENST00000614041 1000 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AP006248.2-201ENST00000623309 592 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC016588.2-201ENST00000632484 3021 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SKA3Q8IX90 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC018555.1-201ENST00000567548 1980 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 RAD1P1-201ENST00000231383 813 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AL078604.1-201ENST00000404609 466 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 RNU4-74P-201ENST00000411280 161 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 JKAMPP1-201ENST00000413804 919 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 ARL2BPP3-201ENST00000421226 480 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 RPS27AP7-201ENST00000422792 455 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC234779.1-201ENST00000425910 285 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 RWDD4P2-201ENST00000426392 563 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC068287.1-201ENST00000430283 295 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 RPEP2-201ENST00000432149 701 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AL353597.2-202ENST00000434901 373 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AL590762.3-201ENST00000436372 640 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AL354710.1-201ENST00000453641 246 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 EIF4A2P2-201ENST00000455776 1070 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 RWDD4P1-201ENST00000488019 565 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 ATP1B1P1-201ENST00000509767 915 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC103833.1-201ENST00000517442 172 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC008083.2-201ENST00000546707 476 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC068831.4-201ENST00000556118 109 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 MIR4700-201ENST00000578311 74 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC022884.3-201ENST00000579571 248 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 SS18L2P2-201ENST00000583960 235 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC079587.1-201ENST00000603846 277 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC008745.1-201ENST00000604064 271 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 KATNBL1P5-201ENST00000605015 517 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC110741.2-201ENST00000605278 268 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC007390.2-201ENST00000606229 3803 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC233309.1-201ENST00000619522 751 ntBASIC3.86□□□□□ -1.79
SKA3Q8IX90 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
SKA3Q8IX90 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SKA3Q8IX90 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms