Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 Y_RNA.578-201ENST00000390903 88 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 OR8V1P-201ENST00000395193 873 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 OSTCP5-201ENST00000425293 453 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 MTCYBP32-201ENST00000427945 1084 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 COX6CP13-201ENST00000428703 226 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC006946.1-201ENST00000429106 328 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC068135.1-201ENST00000446164 246 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 RNU7-140P-201ENST00000459546 60 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 RPL23AP37-201ENST00000479658 549 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 RPL7P16-201ENST00000479738 738 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 RPL23AP72-201ENST00000492447 435 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 TRAV31-201ENST00000502780 342 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 HMGB3P16-201ENST00000508037 287 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC022882.1-201ENST00000532142 501 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 BLZF2P-201ENST00000553776 1130 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 NF1P5-201ENST00000588287 448 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC095055.1-201ENST00000603472 1113 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC103792.1-201ENST00000603591 919 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL365400.2-201ENST00000605604 902 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL161637.1-201ENST00000622380 412 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AP003072.4-201ENST00000624580 310 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC074101.1-201ENST00000637861 241 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LINC01808-202ENST00000641680 1116 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL139811.1-201ENST00000424779 2299 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 MFSD8-216ENST00000641147 4009 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 ASNSP1-204ENST00000641977 1664 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL445487.1-201ENST00000415694 1580 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL672167.1-204ENST00000641875 3017 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 SNORA17.1-201ENST00000362945 126 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL359643.1-201ENST00000404109 423 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AC092745.2-202ENST00000411880 369 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 MTCO2P17-201ENST00000424336 677 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 OR2AH1P-201ENST00000425717 928 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 RRM2P4-201ENST00000441721 562 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AC093166.2-201ENST00000455969 1017 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AC108729.1-201ENST00000487812 947 ntBASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
PDLIM3Q53GG5 AC138938.1-201ENST00000515431 782 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms