Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC011753.3-201ENST00000443436 406 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 AL451050.1-201ENST00000450126 415 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 NDUFS5P3-201ENST00000450668 321 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 MRPL42P4-201ENST00000453267 443 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 MRPL35P4-201ENST00000453682 566 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 AC084754.1-201ENST00000463466 464 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 RPL35AP19-201ENST00000469425 329 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC118465.1-201ENST00000513820 1271 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC012400.1-201ENST00000518452 381 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXA1P49639 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC112191.2-201ENST00000522428 333 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA1P49639 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
HOXA1P49639 AC091515.1-201ENST00000548110 679 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA1P49639 ATP5J2P6-201ENST00000565203 266 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 MIR4505-201ENST00000582238 73 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA1P49639 AL133507.1-201ENST00000605269 557 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC107075.1-201ENST00000613695 314 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 MIR7154-201ENST00000620673 73 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 AC078883.4-201ENST00000623218 367 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA1P49639 ATE1-AS1-202ENST00000636460 506 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 MIR1910-201ENST00000636955 80 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA1P49639 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA1P49639 AL031985.3-201ENST00000565390 2449 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.15□□□□□ -1.75
HOXA1P49639 DCAF13P3-201ENST00000561147 1334 ntBASIC4.15□□□□□ -1.75
HOXA1P49639 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA1P49639 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA1P49639 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA1P49639 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC092747.4-201ENST00000620519 1861 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 OR5H2-201ENST00000355273 945 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HOXA1P49639 RHOT1P2-201ENST00000366423 333 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC093719.1-202ENST00000392735 373 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXA1P49639 FCF1P5-201ENST00000406490 482 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 OR4K12P-201ENST00000406538 961 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 RNA5SP39-201ENST00000411245 120 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 MTND4P22-201ENST00000413116 1169 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC009518.2-201ENST00000418056 731 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 MTND2P18-201ENST00000419962 1030 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 PTP4A1P5-201ENST00000420305 455 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC011233.1-201ENST00000422812 283 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXA1P49639 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC009238.2-201ENST00000431026 355 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 RPS6P12-201ENST00000432491 726 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 RPL23AP19-201ENST00000436229 369 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC002504.1-201ENST00000438281 691 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 AL606490.1-201ENST00000452266 765 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 HMGB1P4-201ENST00000455362 567 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 RN7SL41P-201ENST00000476144 297 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC090114.3-201ENST00000479267 829 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 RN7SL727P-201ENST00000482164 296 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC073073.1-201ENST00000493920 463 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC097173.1-201ENST00000505862 819 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC118282.2-201ENST00000508739 374 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC113347.3-201ENST00000509113 148 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC117522.2-201ENST00000510049 657 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 FABP5P12-201ENST00000515543 389 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 SNORA3.4-201ENST00000515969 96 ntBASIC4.14□□□□□ -1.75
HOXA1P49639 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA1P49639 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA1P49639 AC023050.2-201ENST00000544968 387 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms