Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
MSX1P28360 RNU6-1032P-201ENST00000384100 107 ntBASIC6.33□□□□□ -1.4
MSX1P28360 MIR621-201ENST00000384919 96 ntBASIC6.33□□□□□ -1.4
MSX1P28360 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
MSX1P28360 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.33□□□□□ -1.4
MSX1P28360 RN7SKP144-201ENST00000411108 279 ntBASIC6.33□□□□□ -1.4
MSX1P28360 RPL31P12-201ENST00000422587 358 ntBASIC6.33□□□□□ -1.4
MSX1P28360 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AL160004.2-201ENST00000432935 350 ntBASIC6.33□□□□□ -1.4
MSX1P28360 RPL3P11-201ENST00000434028 1146 ntBASIC6.33□□□□□ -1.4
MSX1P28360 RPS20P5-201ENST00000434808 360 ntBASIC6.33□□□□□ -1.4
MSX1P28360 LINC00328-2P-201ENST00000436585 219 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AL138799.3-201ENST00000438968 350 ntBASIC6.33□□□□□ -1.4
MSX1P28360 H2AFZP6-201ENST00000444403 394 ntBASIC6.33□□□□□ -1.4
MSX1P28360 RPL30P15-201ENST00000457129 321 ntBASIC6.33□□□□□ -1.4
MSX1P28360 RN7SL492P-201ENST00000460700 295 ntBASIC6.33□□□□□ -1.4
MSX1P28360 PABPC1P3-201ENST00000469174 459 ntBASIC6.33□□□□□ -1.4
MSX1P28360 PFN1P6-201ENST00000476786 399 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC011005.3-201ENST00000491624 395 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC090453.1-201ENST00000495560 436 ntBASIC6.33□□□□□ -1.4
MSX1P28360 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AC114324.2-202ENST00000503812 134 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 SUMO2P7-201ENST00000511179 285 ntBASIC6.33□□□□□ -1.4
MSX1P28360 HMGB1P19-201ENST00000517578 577 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 RANP9-201ENST00000519957 271 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 AC008126.1-201ENST00000549019 480 ntBASIC6.33□□□□□ -1.4
MSX1P28360 PPIAP6-201ENST00000557078 499 ntBASIC6.33□□□□□ -1.4
MSX1P28360 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC6.33□□□□□ -1.4
MSX1P28360 MIR4312-201ENST00000579909 76 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AC017100.2-201ENST00000584628 355 ntBASIC6.33□□□□□ -1.4
MSX1P28360 MIR3942-201ENST00000585264 109 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.33□□□□□ -1.4
MSX1P28360 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
MSX1P28360 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX1P28360 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AC096921.2-201ENST00000561507 1916 ntBASIC6.33□□□□□ -1.4
MSX1P28360 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX1P28360 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 TAB3P1-202ENST00000452645 1634 ntBASIC6.32□□□□□ -1.4
MSX1P28360 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX1P28360 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 RNU6-1188P-201ENST00000363795 107 ntBASIC6.32□□□□□ -1.4
MSX1P28360 RNU6-379P-201ENST00000363813 104 ntBASIC6.32□□□□□ -1.4
MSX1P28360 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 AL136131.1-201ENST00000406079 803 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AL033519.1-201ENST00000407266 307 ntBASIC6.32□□□□□ -1.4
MSX1P28360 RN7SKP271-201ENST00000410528 320 ntBASIC6.32□□□□□ -1.4
MSX1P28360 MTND4LP17-201ENST00000414607 293 ntBASIC6.32□□□□□ -1.4
MSX1P28360 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 RPL18AP14-201ENST00000417685 526 ntBASIC6.32□□□□□ -1.4
MSX1P28360 MCFD2P1-201ENST00000417812 300 ntBASIC6.32□□□□□ -1.4
MSX1P28360 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
MSX1P28360 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX1P28360 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.32□□□□□ -1.4
MSX1P28360 EIF4EBP2P1-201ENST00000450009 343 ntBASIC6.32□□□□□ -1.4
MSX1P28360 HMGN3P1-201ENST00000453847 193 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 RPL5P22-201ENST00000480199 884 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 MINOS1P4-201ENST00000515470 318 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC6.32□□□□□ -1.4
MSX1P28360 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX1P28360 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 AC010653.1-201ENST00000571108 881 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AC073539.2-201ENST00000597113 165 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AC036176.3-201ENST00000602456 418 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AC019257.2-201ENST00000605539 497 ntBASIC6.32□□□□□ -1.4
MSX1P28360 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX1P28360 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms