Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DHX40P1-201ENST00000588725 1412 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 ZNF72P-201ENST00000425869 1908 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC090643.1-201ENST00000623600 3100 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL161781.1-201ENST00000354277 403 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 MIR335-201ENST00000362173 94 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RN7SKP250-201ENST00000363924 321 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 Y_RNA.352-201ENST00000365439 102 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RNU6-128P-201ENST00000383976 107 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RNU6-22P-201ENST00000384355 107 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 HMGB3P7-201ENST00000400214 611 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL583834.1-201ENST00000406943 343 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC244452.1-201ENST00000413798 141 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL590632.1-201ENST00000424289 371 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 MED15P9-201ENST00000424716 533 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 TIMM9P1-201ENST00000436122 256 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RPL23AP19-201ENST00000436229 369 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 OR3B1P-201ENST00000437536 893 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC114495.1-201ENST00000441274 436 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 LINC01399-202ENST00000458450 244 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RPL23AP12-201ENST00000467573 473 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RN7SL338P-201ENST00000481467 293 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RNU6-62P-201ENST00000516526 102 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RPA2P3-201ENST00000533268 770 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC138123.2-204ENST00000547432 721 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC090751.1-201ENST00000566966 267 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RN7SL786P-201ENST00000579130 298 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 BX284668.6-201ENST00000606899 438 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 OR6L2P-201ENST00000608207 925 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AP001282.2-201ENST00000616149 309 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AL357559.1-201ENST00000622228 274 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 RHOJ-201ENST00000316754 3302 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC022507.1-201ENST00000548349 1505 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 AC004014.2-201ENST00000623718 5122 ntBASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
VPS9D1Q9Y2B5 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 AC008669.1-201ENST00000565823 2178 ntBASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 WAC-209ENST00000428935 1320 ntTSL 2 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 AC023886.2-201ENST00000321285 411 ntBASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 U3.1-201ENST00000362500 215 ntBASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 SNORA73B-201ENST00000363217 204 ntBASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 Y_RNA.269-201ENST00000364685 89 ntBASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.3□□□□□ -1.24
VPS9D1Q9Y2B5 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms