Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 UBE2D3P4-201ENST00000441973 436 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 MTND5P2-201ENST00000442927 1142 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 MRPL42P4-201ENST00000453267 443 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 RN7SL189P-201ENST00000468631 289 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC097484.1-201ENST00000471148 389 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 EIF3KP3-201ENST00000514461 639 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC117532.1-201ENST00000514638 323 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 snoZ278.1-201ENST00000517059 112 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC024909.2-201ENST00000553035 286 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC011626.1-201ENST00000604710 562 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AL354976.1-201ENST00000613843 387 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AL158163.2-201ENST00000619110 700 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AL596275.2-204ENST00000641628 552 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AL596275.2-206ENST00000641957 626 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 SEC63P2-201ENST00000503863 1939 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 AC011447.7-201ENST00000624228 1590 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 CASC19-281ENST00000642118 1554 ntBASIC5.24□□□□□ -1.57
DKK3Q9UBP4 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
DKK3Q9UBP4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AL079342.2-201ENST00000403367 482 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 GPS2P1-201ENST00000411761 986 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 BTF3L4P1-201ENST00000413813 468 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RPL7P53-201ENST00000421245 739 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 DDX39BP1-205ENST00000422507 192 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 HSPD1P12-201ENST00000429127 1069 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RPL19P16-201ENST00000433839 588 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RPS20P1-201ENST00000434853 354 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 ISCA1P2-201ENST00000438679 421 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 CEACAMP7-201ENST00000444105 496 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 KNOP1P3-201ENST00000446933 426 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 EIF4A1P11-201ENST00000451239 222 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 NPM1P13-201ENST00000452663 865 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RN7SL814P-201ENST00000487715 300 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 RNU6-1004P-201ENST00000516584 111 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC092490.3-201ENST00000545370 572 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC119751.7-201ENST00000600494 245 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.23□□□□□ -1.57
DKK3Q9UBP4 AC124312.4-201ENST00000605533 310 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms