Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC095057.3-201ENST00000567102 1157 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC209154.1-201ENST00000582156 337 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC011487.3-201ENST00000593607 453 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 VN1R87P-201ENST00000596706 487 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC116651.1-201ENST00000609724 556 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC131238.1-201ENST00000617135 328 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 SNORA51.8-201ENST00000384234 132 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 MIR195-201ENST00000385194 87 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 DNAJC19P6-201ENST00000401853 280 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AL133270.1-201ENST00000402635 279 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC092745.2-202ENST00000411880 369 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 TAF13P2-201ENST00000416876 286 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 Z74021.1-201ENST00000423610 407 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 OSTCP5-201ENST00000425293 453 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 PSMD10P3-201ENST00000437000 448 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 RPL7P11-201ENST00000437586 658 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC234781.3-201ENST00000452540 973 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC113420.1-201ENST00000507903 571 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 PRELID3BP4-201ENST00000515476 571 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC087897.1-201ENST00000550134 156 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC133555.2-201ENST00000550213 292 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AGGF1P5-201ENST00000567900 919 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC020910.3-201ENST00000603701 874 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AL121932.1-201ENST00000605542 214 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 SNORD91B-202ENST00000608459 222 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AL136295.6-201ENST00000610486 658 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 U6.48-201ENST00000618523 106 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC104985.3-201ENST00000623479 597 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC090506.2-201ENST00000624521 419 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.07□□□□□ -1.76
NKX3-1Q99801 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 DDX18P4-201ENST00000511690 1966 ntBASIC4.07□□□□□ -1.76
NKX3-1Q99801 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NKX3-1Q99801 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC006042.3-201ENST00000454684 1469 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC104446.1-201ENST00000613728 1321 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC009313.2-201ENST00000417893 1941 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 Z97832.1-201ENST00000402490 328 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC104837.2-201ENST00000427236 424 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC092634.2-201ENST00000428146 1010 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC073648.4-201ENST00000442655 781 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms