Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 RNA5SP267-201ENST00000364893 126 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 SETP14-201ENST00000497538 873 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 OR7M1P-201ENST00000608946 533 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC138907.10-201ENST00000623708 983 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC024023.1-201ENST00000624530 922 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 MIR34B-201ENST00000385076 84 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 RPS7P15-201ENST00000415804 584 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 RPS17P13-201ENST00000448974 407 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 RPL21P10-201ENST00000463521 490 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AP000563.1-201ENST00000490865 758 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC091167.4-201ENST00000605079 184 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 AC064801.1-201ENST00000612025 407 ntBASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC88AQ3V6T2 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 CDY11P-201ENST00000447168 1651 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 AL442128.2-201ENST00000620246 1824 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 Y_RNA.111-201ENST00000363248 100 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 U1.1-201ENST00000384101 164 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 ARL4AP3-201ENST00000441452 574 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 UBE2DNL-203ENST00000474922 222 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 WBP1LP4-201ENST00000505043 344 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 RN7SKP289-201ENST00000517244 295 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 FTH1P11-201ENST00000517577 551 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 AP005262.1-201ENST00000582646 997 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 AC022146.1-201ENST00000595307 847 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 AL355365.1-201ENST00000616480 294 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 SAMMSON-213ENST00000641336 1521 ntBASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
CCDC88AQ3V6T2 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 PDSS1P2-201ENST00000449397 678 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 RNU1-30P-201ENST00000606575 163 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC016590.3-201ENST00000611171 753 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC138627.1-204ENST00000641894 765 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 SNORA60-201ENST00000362396 134 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 TRIM60P17-201ENST00000415181 719 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 RN7SKP57-201ENST00000517248 293 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC008694.2-201ENST00000517591 306 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 IGLV3-26-201ENST00000520756 302 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 DUX4L52-201ENST00000549363 777 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC063950.1-201ENST00000552036 308 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AF001550.2-201ENST00000636643 217 ntBASIC4.86□□□□□ -1.63
CCDC88AQ3V6T2 AC093591.2-201ENST00000565254 3843 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 ZNF962P-201ENST00000443465 3140 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms