Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.97□□□□□ -1.61
HDAC4P56524 MIR141-201ENST00000384975 95 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 RNA5SP113-201ENST00000410486 84 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 OR51B3P-201ENST00000412287 913 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC016397.1-201ENST00000412463 242 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC013404.1-201ENST00000413068 249 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 RPL7P57-201ENST00000423238 740 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 GSTA7P-201ENST00000438425 448 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.97□□□□□ -1.61
HDAC4P56524 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 AL035407.2-201ENST00000454090 378 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 RPS5P7-201ENST00000456664 608 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 RPS3AP41-201ENST00000462701 778 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 PPIAP21-201ENST00000464473 501 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC063943.1-201ENST00000465434 453 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC091868.1-201ENST00000508746 304 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.97□□□□□ -1.61
HDAC4P56524 AP001922.4-201ENST00000526967 290 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.97□□□□□ -1.61
HDAC4P56524 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.97□□□□□ -1.61
HDAC4P56524 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 AC074050.1-201ENST00000563247 211 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 MIR4436B2-201ENST00000581415 91 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 MIR4436B1-201ENST00000583272 91 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.97□□□□□ -1.61
HDAC4P56524 AL031320.1-201ENST00000604177 357 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC013244.3-201ENST00000605614 388 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.97□□□□□ -1.61
HDAC4P56524 FRG1HP-204ENST00000617940 757 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AC022079.2-201ENST00000619739 566 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.97□□□□□ -1.61
HDAC4P56524 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 AL356489.2-201ENST00000566968 3528 ntBASIC4.97□□□□□ -1.61
HDAC4P56524 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDAC4P56524 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.97□□□□□ -1.61
HDAC4P56524 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
HDAC4P56524 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HDAC4P56524 AC091046.3-201ENST00000631455 1574 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HDAC4P56524 ZNF29P-201ENST00000225587 168 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDAC4P56524 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.96□□□□□ -1.62
HDAC4P56524 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HDAC4P56524 AL035419.1-201ENST00000397037 564 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 AL356967.1-201ENST00000406305 431 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 HMGB3P18-201ENST00000406327 590 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.96□□□□□ -1.62
HDAC4P56524 RSU1P3-201ENST00000412878 835 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 RPS24P8-201ENST00000431490 402 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDAC4P56524 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.96□□□□□ -1.62
HDAC4P56524 CBX1P4-201ENST00000439415 457 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 HSFY3P-201ENST00000444242 1191 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 MRPL48P1-201ENST00000445390 636 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.96□□□□□ -1.62
HDAC4P56524 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 TPT1P13-201ENST00000449760 499 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 AC009220.1-201ENST00000451614 275 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 AC026414.1-201ENST00000504046 698 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.96□□□□□ -1.62
HDAC4P56524 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HDAC4P56524 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.96□□□□□ -1.62
HDAC4P56524 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 AC091163.3-201ENST00000518269 1144 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 AP001880.2-201ENST00000538233 448 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 EDDM3DP-201ENST00000554692 434 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDAC4P56524 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC4.96□□□□□ -1.62
HDAC4P56524 MIR4509-3-201ENST00000578671 94 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 MIR4509-2-201ENST00000583920 94 ntBASIC4.96□□□□□ -1.62
HDAC4P56524 RNF138P2-201ENST00000603490 592 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms