Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA3P55318 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC3.01□□□□□ -1.93
FOXA3P55318 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
FOXA3P55318 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA3P55318 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.01□□□□□ -1.93
FOXA3P55318 CR381670.1-201ENST00000624291 1693 ntBASIC3.01□□□□□ -1.93
FOXA3P55318 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA3P55318 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA3P55318 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA3P55318 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA3P55318 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
FOXA3P55318 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3□□□□□ -1.93
FOXA3P55318 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA3P55318 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3□□□□□ -1.93
FOXA3P55318 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA3P55318 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC3□□□□□ -1.93
FOXA3P55318 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA3P55318 SNORA70F-201ENST00000384142 135 ntBASIC3□□□□□ -1.93
FOXA3P55318 AMZ2P2-201ENST00000406819 1057 ntBASIC3□□□□□ -1.93
FOXA3P55318 RNA5SP36-201ENST00000410197 133 ntBASIC3□□□□□ -1.93
FOXA3P55318 NRBF2P2-201ENST00000413087 861 ntBASIC3□□□□□ -1.93
FOXA3P55318 MFSD13B-201ENST00000420133 1290 ntBASIC3□□□□□ -1.93
FOXA3P55318 AC073464.3-201ENST00000422564 712 ntBASIC3□□□□□ -1.93
FOXA3P55318 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC3□□□□□ -1.93
FOXA3P55318 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC3□□□□□ -1.93
FOXA3P55318 AC008072.1-201ENST00000434254 824 ntBASIC3□□□□□ -1.93
FOXA3P55318 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3□□□□□ -1.93
FOXA3P55318 RPL12P11-201ENST00000439970 501 ntBASIC3□□□□□ -1.93
FOXA3P55318 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3□□□□□ -1.93
FOXA3P55318 OR52Y1P-201ENST00000452418 828 ntBASIC3□□□□□ -1.93
FOXA3P55318 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC3□□□□□ -1.93
FOXA3P55318 PPIAP15-201ENST00000479662 484 ntBASIC3□□□□□ -1.93
FOXA3P55318 RPL7P24-201ENST00000493052 752 ntBASIC3□□□□□ -1.93
FOXA3P55318 AC093824.1-201ENST00000508796 343 ntBASIC3□□□□□ -1.93
FOXA3P55318 AC147055.3-201ENST00000510547 851 ntBASIC3□□□□□ -1.93
FOXA3P55318 KRT19P6-201ENST00000510983 209 ntBASIC3□□□□□ -1.93
FOXA3P55318 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC3□□□□□ -1.93
FOXA3P55318 RNA5SP34-201ENST00000516887 130 ntBASIC3□□□□□ -1.93
FOXA3P55318 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC3□□□□□ -1.93
FOXA3P55318 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 AC105036.1-201ENST00000566222 271 ntBASIC3□□□□□ -1.93
FOXA3P55318 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 MIR4512-201ENST00000583257 77 ntBASIC3□□□□□ -1.93
FOXA3P55318 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3□□□□□ -1.93
FOXA3P55318 AL451044.1-201ENST00000604867 238 ntBASIC3□□□□□ -1.93
FOXA3P55318 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC3□□□□□ -1.93
FOXA3P55318 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
FOXA3P55318 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA3P55318 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 ACTR3BP2-202ENST00000623630 1338 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 AC100871.1-201ENST00000507871 1456 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
FOXA3P55318 RNU1-14P-201ENST00000362759 152 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RNU6-328P-201ENST00000390887 106 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RN7SKP235-201ENST00000410662 305 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RPL37P18-201ENST00000411602 243 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 OR5AW1P-201ENST00000426334 1006 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AL359265.2-201ENST00000434367 631 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RPL23AP46-201ENST00000438548 490 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA3P55318 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC2.99□□□□□ -1.93
FOXA3P55318 CEACAMP7-201ENST00000444105 496 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RPL31P44-201ENST00000447680 377 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA3P55318 RNU7-170P-201ENST00000459303 61 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC2.99□□□□□ -1.93
FOXA3P55318 RPL7L1P8-201ENST00000469911 741 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RPS27AP16-201ENST00000492222 470 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AP001086.1-201ENST00000494882 321 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.99□□□□□ -1.93
FOXA3P55318 TRAV31-201ENST00000502780 342 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC2.99□□□□□ -1.93
FOXA3P55318 RNU6-1231P-201ENST00000517185 103 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA3P55318 UBE2FP2-201ENST00000566646 462 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 MIR3934-201ENST00000579806 107 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC2.99□□□□□ -1.93
FOXA3P55318 VN1R81P-201ENST00000602085 372 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AC114878.2-201ENST00000604863 1251 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 BRDTP1-201ENST00000605735 677 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC2.99□□□□□ -1.93
FOXA3P55318 AC116651.1-201ENST00000609724 556 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA3P55318 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
FOXA3P55318 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC2.99□□□□□ -1.93
FOXA3P55318 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA3P55318 AC110792.3-201ENST00000595906 1614 ntBASIC2.99□□□□□ -1.93
FOXA3P55318 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA3P55318 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms