Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.57□□□□□ -1.52
MSH6P52701 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH6P52701 AC025627.2-201ENST00000576220 160 ntBASIC5.57□□□□□ -1.52
MSH6P52701 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH6P52701 AC243654.2-201ENST00000612843 443 ntBASIC5.57□□□□□ -1.52
MSH6P52701 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
MSH6P52701 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSH6P52701 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH6P52701 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH6P52701 AL078595.2-201ENST00000605309 1780 ntBASIC5.57□□□□□ -1.52
MSH6P52701 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
MSH6P52701 AL513548.1-201ENST00000562904 1724 ntBASIC5.57□□□□□ -1.52
MSH6P52701 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH6P52701 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH6P52701 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH6P52701 U1.1-201ENST00000384101 164 ntBASIC5.56□□□□□ -1.52
MSH6P52701 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH6P52701 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH6P52701 RPS27AP15-201ENST00000447672 466 ntBASIC5.56□□□□□ -1.52
MSH6P52701 CYCSP35-201ENST00000451978 304 ntBASIC5.56□□□□□ -1.52
MSH6P52701 RPL5P24-201ENST00000463742 885 ntBASIC5.56□□□□□ -1.52
MSH6P52701 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH6P52701 RN7SKP18-201ENST00000516005 275 ntBASIC5.56□□□□□ -1.52
MSH6P52701 RN7SKP57-201ENST00000517248 293 ntBASIC5.56□□□□□ -1.52
MSH6P52701 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH6P52701 OOSP1P2-201ENST00000579644 351 ntBASIC5.56□□□□□ -1.52
MSH6P52701 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH6P52701 AC233702.9-201ENST00000581528 203 ntBASIC5.56□□□□□ -1.52
MSH6P52701 AC091167.4-201ENST00000605079 184 ntBASIC5.56□□□□□ -1.52
MSH6P52701 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH6P52701 ZNF833P-201ENST00000424938 1494 ntBASIC5.56□□□□□ -1.52
MSH6P52701 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSH6P52701 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH6P52701 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSH6P52701 NAMPTP1-201ENST00000440465 2514 ntBASIC5.56□□□□□ -1.52
MSH6P52701 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH6P52701 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH6P52701 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH6P52701 AC083899.2-201ENST00000423285 1376 ntBASIC5.55□□□□□ -1.52
MSH6P52701 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.55□□□□□ -1.52
MSH6P52701 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.55□□□□□ -1.52
MSH6P52701 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 EIF4A1P11-201ENST00000451239 222 ntBASIC5.55□□□□□ -1.52
MSH6P52701 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH6P52701 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH6P52701 MIR4433B-201ENST00000581329 102 ntBASIC5.55□□□□□ -1.52
MSH6P52701 AC026368.1-201ENST00000614934 690 ntBASIC5.55□□□□□ -1.52
MSH6P52701 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
MSH6P52701 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.55□□□□□ -1.52
MSH6P52701 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
MSH6P52701 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
MSH6P52701 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.55□□□□□ -1.52
MSH6P52701 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.55□□□□□ -1.52
MSH6P52701 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH6P52701 TRIM60P17-201ENST00000415181 719 ntBASIC5.55□□□□□ -1.52
MSH6P52701 AL161631.1-201ENST00000417933 486 ntBASIC5.55□□□□□ -1.52
MSH6P52701 AC004448.2-201ENST00000422360 586 ntBASIC5.55□□□□□ -1.52
MSH6P52701 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.55□□□□□ -1.52
MSH6P52701 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.55□□□□□ -1.52
MSH6P52701 RN7SL601P-201ENST00000471221 293 ntBASIC5.55□□□□□ -1.52
MSH6P52701 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH6P52701 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH6P52701 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH6P52701 MIR432-201ENST00000606207 94 ntBASIC5.55□□□□□ -1.52
MSH6P52701 DDX18P6-201ENST00000450119 1997 ntBASIC5.54□□□□□ -1.52
MSH6P52701 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSH6P52701 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSH6P52701 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH6P52701 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
MSH6P52701 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH6P52701 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
MSH6P52701 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH6P52701 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
MSH6P52701 AL049873.1-201ENST00000480540 376 ntBASIC5.54□□□□□ -1.52
MSH6P52701 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH6P52701 RPL23AP94-201ENST00000512518 302 ntBASIC5.54□□□□□ -1.52
MSH6P52701 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.54□□□□□ -1.52
MSH6P52701 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH6P52701 AL121890.2-201ENST00000617644 465 ntBASIC5.54□□□□□ -1.52
MSH6P52701 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH6P52701 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH6P52701 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH6P52701 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH6P52701 NR1H5P-201ENST00000452683 1377 ntBASIC5.53□□□□□ -1.52
MSH6P52701 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
MSH6P52701 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC5.53□□□□□ -1.52
MSH6P52701 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms