Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 AC021242.1-201ENST00000507315 2035 ntBASIC6.25□□□□□ -1.41
LIG3P49916 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIG3P49916 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIG3P49916 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 RNU1-49P-201ENST00000363468 159 ntBASIC6.24□□□□□ -1.41
LIG3P49916 SNORA72.1-201ENST00000363485 129 ntBASIC6.24□□□□□ -1.41
LIG3P49916 FGF7P8-201ENST00000402994 292 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AL512422.1-201ENST00000407033 553 ntBASIC6.24□□□□□ -1.41
LIG3P49916 RN7SKP285-201ENST00000410137 318 ntBASIC6.24□□□□□ -1.41
LIG3P49916 RPS3AP3-201ENST00000411933 242 ntBASIC6.24□□□□□ -1.41
LIG3P49916 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.24□□□□□ -1.41
LIG3P49916 AL512605.1-202ENST00000441919 381 ntBASIC6.24□□□□□ -1.41
LIG3P49916 GDI2P2-201ENST00000445131 608 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC6.24□□□□□ -1.41
LIG3P49916 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC6.24□□□□□ -1.41
LIG3P49916 RPS15AP1-201ENST00000457423 391 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 AC106872.3-201ENST00000495104 446 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AC114981.1-201ENST00000503897 678 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AC108078.1-201ENST00000508073 725 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC6.24□□□□□ -1.41
LIG3P49916 AC098799.2-201ENST00000509466 868 ntBASIC6.24□□□□□ -1.41
LIG3P49916 PTGES3P3-201ENST00000511479 482 ntBASIC6.24□□□□□ -1.41
LIG3P49916 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.24□□□□□ -1.41
LIG3P49916 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 AC005363.1-201ENST00000530779 351 ntBASIC6.24□□□□□ -1.41
LIG3P49916 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC6.24□□□□□ -1.41
LIG3P49916 TOMM20P1-201ENST00000534518 427 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AP001858.2-201ENST00000536213 601 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 HSPE1P2-201ENST00000554777 306 ntBASIC6.24□□□□□ -1.41
LIG3P49916 CFL2-206ENST00000556161 546 ntTSL 4 BASIC6.24□□□□□ -1.41
LIG3P49916 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.24□□□□□ -1.41
LIG3P49916 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 AC122134.1-201ENST00000565664 1104 ntBASIC6.24□□□□□ -1.41
LIG3P49916 MIR3189-201ENST00000578735 73 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AC017100.2-201ENST00000584628 355 ntBASIC6.24□□□□□ -1.41
LIG3P49916 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.24□□□□□ -1.41
LIG3P49916 AP000907.4-201ENST00000604143 237 ntBASIC6.24□□□□□ -1.41
LIG3P49916 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 AC092954.2-201ENST00000609103 430 ntBASIC6.24□□□□□ -1.41
LIG3P49916 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC6.24□□□□□ -1.41
LIG3P49916 DUXAP9-208ENST00000622815 614 ntBASIC6.24□□□□□ -1.41
LIG3P49916 MIR6863-201ENST00000636112 90 ntBASIC6.24□□□□□ -1.41
LIG3P49916 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.24□□□□□ -1.41
LIG3P49916 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIG3P49916 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.24□□□□□ -1.41
LIG3P49916 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIG3P49916 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
LIG3P49916 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 AC016583.1-201ENST00000624221 2431 ntBASIC6.23□□□□□ -1.41
LIG3P49916 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 RNA5SP110-201ENST00000362638 115 ntBASIC6.23□□□□□ -1.41
LIG3P49916 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.23□□□□□ -1.41
LIG3P49916 CCNG1P1-201ENST00000406783 885 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC007394.1-201ENST00000421941 531 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.23□□□□□ -1.41
LIG3P49916 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.23□□□□□ -1.41
LIG3P49916 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.23□□□□□ -1.41
LIG3P49916 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC6.23□□□□□ -1.41
LIG3P49916 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC6.23□□□□□ -1.41
LIG3P49916 AC073410.1-201ENST00000435125 589 ntBASIC6.23□□□□□ -1.41
LIG3P49916 SKP1P1-201ENST00000438081 489 ntBASIC6.23□□□□□ -1.41
LIG3P49916 SNRPEP7-201ENST00000438350 220 ntBASIC6.23□□□□□ -1.41
LIG3P49916 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.23□□□□□ -1.41
LIG3P49916 RPS23P9-201ENST00000448848 438 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AL590365.1-201ENST00000450788 243 ntBASIC6.23□□□□□ -1.41
LIG3P49916 OFD1P4Y-201ENST00000455273 1179 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC017015.1-201ENST00000477387 286 ntBASIC6.23□□□□□ -1.41
LIG3P49916 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms