Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HMGB3P21-201ENST00000452483 547 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AL121877.1-201ENST00000453704 622 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN4P29074 RPL7P48-201ENST00000461513 746 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AC090142.1-201ENST00000465776 462 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 RPL23AP2-201ENST00000471227 466 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN4P29074 AC093663.2-201ENST00000484625 313 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.45□□□□□ -1.7
PTPN4P29074 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN4P29074 RNU6-1004P-201ENST00000516584 111 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 UBTFL9-201ENST00000534504 1148 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN4P29074 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN4P29074 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN4P29074 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN4P29074 AC069061.3-201ENST00000582254 823 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN4P29074 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PTPN4P29074 RPL12P25-202ENST00000598100 674 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AC068790.5-201ENST00000602741 355 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AC243654.2-201ENST00000612843 443 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN4P29074 AL354696.1-201ENST00000614652 497 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 RMST_9.1-201ENST00000619945 193 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 AC116563.2-201ENST00000624751 535 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 CFTRP2-201ENST00000634304 199 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.45□□□□□ -1.7
PTPN4P29074 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN4P29074 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PTPN4P29074 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN4P29074 IQCB2P-201ENST00000401788 1633 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN4P29074 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PTPN4P29074 AL133243.3-201ENST00000617415 3004 ntBASIC4.45□□□□□ -1.7
PTPN4P29074 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN4P29074 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN4P29074 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN4P29074 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN4P29074 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.44□□□□□ -1.7
PTPN4P29074 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 IGKV7-3-201ENST00000357453 298 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 RNU6-984P-201ENST00000363236 109 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 RNA5SP513-201ENST00000364648 118 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 RNU6-244P-201ENST00000391028 104 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 FCF1P5-201ENST00000406490 482 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 ELOCP19-201ENST00000411919 318 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 OR51B3P-201ENST00000412287 913 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC062016.2-201ENST00000420950 676 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AL138785.1-201ENST00000425821 331 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.44□□□□□ -1.7
PTPN4P29074 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.44□□□□□ -1.7
PTPN4P29074 RPS15AP29-201ENST00000445539 400 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 H2AFZP5-201ENST00000446960 382 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 Z95152.1-201ENST00000453556 656 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN4P29074 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.44□□□□□ -1.7
PTPN4P29074 RPS26P15-201ENST00000488067 348 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC013356.1-201ENST00000489027 564 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 PPM1AP1-201ENST00000502740 1135 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 IGBP1P5-201ENST00000507524 1000 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC022790.1-201ENST00000522872 204 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN4P29074 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN4P29074 AL731537.2-201ENST00000561565 951 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC136624.4-201ENST00000573044 370 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC011477.5-201ENST00000586571 259 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC073091.2-201ENST00000603205 907 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC090525.3-201ENST00000605601 189 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AL021368.1-201ENST00000607490 540 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 OR7A19P-201ENST00000608051 733 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN4P29074 AC003001.2-201ENST00000616294 831 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 AC016717.3-201ENST00000624730 554 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN4P29074 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 AC015813.6-201ENST00000624409 5808 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN4P29074 OR56B2P-202ENST00000641377 2453 ntBASIC4.44□□□□□ -1.7
PTPN4P29074 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTPN4P29074 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.43□□□□□ -1.7
PTPN4P29074 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTPN4P29074 AC093311.1-201ENST00000506586 2021 ntBASIC4.43□□□□□ -1.7
PTPN4P29074 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms