Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC064801.1-201ENST00000612025 407 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AC005344.1-201ENST00000613391 459 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL5A1P20908 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC3.85□□□□□ -1.79
COL5A1P20908 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 GVINP1-202ENST00000531871 7271 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC3.85□□□□□ -1.79
COL5A1P20908 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL5A1P20908 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.85□□□□□ -1.79
COL5A1P20908 MIR30B-201ENST00000384850 88 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 FABP3P2-201ENST00000453169 399 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 AL133244.1-201ENST00000456007 258 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 AC022795.1-201ENST00000473808 480 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 AL049873.1-201ENST00000480540 376 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 RPS3AP6-201ENST00000484430 795 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 TCP11X3P-202ENST00000514289 1254 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 NDUFA5P2-201ENST00000519723 344 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 AC015726.1-201ENST00000602353 681 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 U3.45-201ENST00000607547 219 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 AC138907.10-201ENST00000623708 983 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 AC138627.1-204ENST00000641894 765 ntBASIC3.85□□□□□ -1.79
COL5A1P20908 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL5A1P20908 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
COL5A1P20908 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL5A1P20908 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
COL5A1P20908 AC008079.2-201ENST00000623543 20396 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC3.84□□□□□ -1.79
COL5A1P20908 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 RNU6-1279P-201ENST00000383917 103 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC3.84□□□□□ -1.79
COL5A1P20908 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC3.84□□□□□ -1.79
COL5A1P20908 SCARNA14-201ENST00000516903 136 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 RN7SKP289-201ENST00000517244 295 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.84□□□□□ -1.79
COL5A1P20908 AC090136.1-201ENST00000520009 240 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.84□□□□□ -1.79
COL5A1P20908 AC069240.1-201ENST00000548774 375 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 AC063950.1-201ENST00000552036 308 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 AC023389.2-201ENST00000580031 955 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.84□□□□□ -1.79
COL5A1P20908 SNX6P1-201ENST00000601728 1224 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 AL645927.2-201ENST00000618350 349 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 AC055839.1-201ENST00000634467 498 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 MTND5P1-201ENST00000445440 1375 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 AC010300.1-201ENST00000600671 5134 ntBASIC3.84□□□□□ -1.79
COL5A1P20908 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL5A1P20908 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.84□□□□□ -1.79
COL5A1P20908 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC3.84□□□□□ -1.8
COL5A1P20908 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.8
COL5A1P20908 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL5A1P20908 OR52E6-202ENST00000379946 954 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
COL5A1P20908 OR4K6P-201ENST00000416478 897 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 GNG5P5-201ENST00000420444 220 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.84□□□□□ -1.8
COL5A1P20908 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.84□□□□□ -1.8
COL5A1P20908 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.84□□□□□ -1.8
COL5A1P20908 RPL23AP89-201ENST00000439324 255 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 RPS17P13-201ENST00000448974 407 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 CYCSP53-201ENST00000455540 265 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.84□□□□□ -1.8
COL5A1P20908 UBE2CP3-201ENST00000502715 450 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 PPBPP1-201ENST00000510807 373 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 HMGN1P15-201ENST00000513870 295 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 AC087369.1-201ENST00000520775 996 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.84□□□□□ -1.8
COL5A1P20908 AC016957.2-201ENST00000616998 848 ntBASIC3.84□□□□□ -1.8
COL5A1P20908 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL5A1P20908 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.83□□□□□ -1.8
COL5A1P20908 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A1P20908 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC3.83□□□□□ -1.8
COL5A1P20908 AP004289.2-201ENST00000444413 1457 ntBASIC3.83□□□□□ -1.8
COL5A1P20908 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A1P20908 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A1P20908 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A1P20908 AL358832.1-201ENST00000497800 389 ntBASIC3.83□□□□□ -1.8
COL5A1P20908 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.83□□□□□ -1.8
COL5A1P20908 PRELID3BP6-201ENST00000503839 571 ntBASIC3.83□□□□□ -1.8
COL5A1P20908 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.83□□□□□ -1.8
COL5A1P20908 AC008638.3-201ENST00000603341 463 ntBASIC3.83□□□□□ -1.8
COL5A1P20908 AC091167.4-201ENST00000605079 184 ntBASIC3.83□□□□□ -1.8
COL5A1P20908 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.83□□□□□ -1.8
COL5A1P20908 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.83□□□□□ -1.8
COL5A1P20908 AL356274.2-201ENST00000624379 3752 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.82□□□□□ -1.8
COL5A1P20908 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.82□□□□□ -1.8
COL5A1P20908 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms