Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORD125-201ENST00000459538 96 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 RPL7P1-201ENST00000468161 747 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RPL7P9-201ENST00000468715 747 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC011979.1-201ENST00000472300 483 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RPL7P40-201ENST00000481703 745 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC025459.1-201ENST00000504072 156 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC005178.1-201ENST00000508392 440 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 LTV1P1-201ENST00000510683 1237 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC091965.2-201ENST00000512324 613 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 snoZ278.1-201ENST00000517059 112 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.94□□□□□ -1.46
COL6A1P12109 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 HIGD1AP10-201ENST00000527837 282 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.94□□□□□ -1.46
COL6A1P12109 AP006289.1-201ENST00000538089 277 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.94□□□□□ -1.46
COL6A1P12109 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.94□□□□□ -1.46
COL6A1P12109 AL133241.1-201ENST00000556832 487 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.94□□□□□ -1.46
COL6A1P12109 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 AC136624.4-201ENST00000573044 370 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 MIR548Y-201ENST00000582739 110 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 MIR4691-201ENST00000583764 85 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A1P12109 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A1P12109 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 AP004607.9-201ENST00000618202 316 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC005609.4-201ENST00000625071 447 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A1P12109 AC068137.3-201ENST00000639191 341 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC073869.6-201ENST00000640656 341 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC073055.1-201ENST00000456901 1621 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 AL078621.3-201ENST00000623707 2042 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL6A1P12109 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
COL6A1P12109 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A1P12109 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A1P12109 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.93□□□□□ -1.46
COL6A1P12109 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A1P12109 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A1P12109 RNU4-44P-201ENST00000363050 141 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 RNA5SP27-201ENST00000363839 119 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 Y_RNA.192-201ENST00000363977 102 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 SNORA70.9-201ENST00000384370 135 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 MT-TH-201ENST00000387441 69 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 RNU6-757P-201ENST00000410334 100 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 CHEK2P3-201ENST00000416118 248 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 MTCO2P34-201ENST00000421994 607 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 DDX39BP1-205ENST00000422507 192 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AL049610.1-201ENST00000423374 372 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 USP24P1-201ENST00000433802 779 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 Z74696.2-201ENST00000436514 498 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 MTCO1P19-201ENST00000443487 500 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A1P12109 AL606662.1-201ENST00000445763 553 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.93□□□□□ -1.46
COL6A1P12109 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 RPS6P4-201ENST00000494693 758 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC111193.1-201ENST00000504097 155 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A1P12109 CDC42P4-201ENST00000510507 563 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 GTF2F2P1-201ENST00000511083 675 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 RFPL4AP5-201ENST00000514977 504 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.93□□□□□ -1.46
COL6A1P12109 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.93□□□□□ -1.46
COL6A1P12109 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC5.93□□□□□ -1.46
COL6A1P12109 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 MTND4LP18-201ENST00000526864 291 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms