Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 AC130371.2-201ENST00000619443 611 ntBASIC19.48■□□□□ 0.71
DKK3Q9UBP4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 RCC2P6-201ENST00000526625 1557 ntBASIC19.47■□□□□ 0.71
DKK3Q9UBP4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 AC079598.2-202ENST00000546624 1451 ntBASIC19.47■□□□□ 0.71
DKK3Q9UBP4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
DKK3Q9UBP4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AC004951.3-201ENST00000418645 1148 ntBASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DKK3Q9UBP4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DKK3Q9UBP4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 MMP23A-201ENST00000234610 1017 ntBASIC19.44■□□□□ 0.7
DKK3Q9UBP4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms