Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.21■□□□□ 0.99
HIPK3Q9H422 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HIPK3Q9H422 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
HIPK3Q9H422 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HIPK3Q9H422 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HIPK3Q9H422 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HIPK3Q9H422 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.21■□□□□ 0.99
HIPK3Q9H422 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 STARP1-201ENST00000397973 869 ntBASIC21.2■□□□□ 0.98
HIPK3Q9H422 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 NEK4P2-201ENST00000580004 1012 ntBASIC21.2■□□□□ 0.98
HIPK3Q9H422 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 HYMAI.1-201ENST00000620949 238 ntBASIC21.2■□□□□ 0.98
HIPK3Q9H422 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HIPK3Q9H422 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 LINC01311-201ENST00000565162 1445 ntBASIC21.2■□□□□ 0.98
HIPK3Q9H422 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HIPK3Q9H422 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 ATP5G2P1-201ENST00000433580 426 ntBASIC21.19■□□□□ 0.98
HIPK3Q9H422 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 GCSHP2-201ENST00000560971 527 ntBASIC21.19■□□□□ 0.98
HIPK3Q9H422 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
HIPK3Q9H422 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.19■□□□□ 0.98
HIPK3Q9H422 BX119927.1-201ENST00000636596 1552 ntBASIC21.19■□□□□ 0.98
HIPK3Q9H422 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.18■□□□□ 0.98
HIPK3Q9H422 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.18■□□□□ 0.98
HIPK3Q9H422 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.18■□□□□ 0.98
HIPK3Q9H422 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.18■□□□□ 0.98
HIPK3Q9H422 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.18■□□□□ 0.98
HIPK3Q9H422 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 AP001271.2-201ENST00000624018 1556 ntBASIC21.18■□□□□ 0.98
HIPK3Q9H422 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.18■□□□□ 0.98
HIPK3Q9H422 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HIPK3Q9H422 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms