Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CDX2Q99626 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.33■□□□□ 0.85
CDX2Q99626 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.33■□□□□ 0.85
CDX2Q99626 AC073648.2-201ENST00000510116 352 ntBASIC20.33■□□□□ 0.85
CDX2Q99626 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.33■□□□□ 0.85
CDX2Q99626 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.33■□□□□ 0.85
CDX2Q99626 AC099336.1-202ENST00000602961 463 ntBASIC20.33■□□□□ 0.85
CDX2Q99626 AC079602.3-201ENST00000623931 403 ntBASIC20.33■□□□□ 0.85
CDX2Q99626 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDX2Q99626 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CDX2Q99626 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX2Q99626 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX2Q99626 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX2Q99626 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CDX2Q99626 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 AL031284.1-201ENST00000419297 478 ntBASIC20.32■□□□□ 0.84
CDX2Q99626 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.32■□□□□ 0.84
CDX2Q99626 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.32■□□□□ 0.84
CDX2Q99626 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 REXO1L6P-202ENST00000619970 1078 ntBASIC20.32■□□□□ 0.84
CDX2Q99626 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CDX2Q99626 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CDX2Q99626 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX2Q99626 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX2Q99626 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.31■□□□□ 0.84
CDX2Q99626 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CDX2Q99626 LINC00167-201ENST00000530583 1419 ntBASIC20.31■□□□□ 0.84
CDX2Q99626 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
CDX2Q99626 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 MIR662-201ENST00000384847 95 ntBASIC20.31■□□□□ 0.84
CDX2Q99626 HLA-F-220ENST00000434407 884 ntBASIC20.31■□□□□ 0.84
CDX2Q99626 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.31■□□□□ 0.84
CDX2Q99626 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.31■□□□□ 0.84
CDX2Q99626 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.31■□□□□ 0.84
CDX2Q99626 RNF126P1-202ENST00000569893 925 ntBASIC20.31■□□□□ 0.84
CDX2Q99626 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.31■□□□□ 0.84
CDX2Q99626 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.31■□□□□ 0.84
CDX2Q99626 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX2Q99626 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.31■□□□□ 0.84
CDX2Q99626 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.3■□□□□ 0.84
CDX2Q99626 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.3■□□□□ 0.84
CDX2Q99626 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.3■□□□□ 0.84
CDX2Q99626 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
CDX2Q99626 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.3■□□□□ 0.84
CDX2Q99626 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.3■□□□□ 0.84
CDX2Q99626 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 FAM197Y8-203ENST00000450145 560 ntBASIC20.3■□□□□ 0.84
CDX2Q99626 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.3■□□□□ 0.84
CDX2Q99626 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.3■□□□□ 0.84
CDX2Q99626 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.3■□□□□ 0.84
CDX2Q99626 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX2Q99626 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CDX2Q99626 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CDX2Q99626 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.29■□□□□ 0.84
CDX2Q99626 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.29■□□□□ 0.84
CDX2Q99626 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.29■□□□□ 0.84
CDX2Q99626 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CDX2Q99626 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CDX2Q99626 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms