Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 AL160237.2-201ENST00000556165 472 ntBASIC20.61■□□□□ 0.89
CHD9Q3L8U1 AC011498.5-201ENST00000592027 486 ntBASIC20.61■□□□□ 0.89
CHD9Q3L8U1 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.61■□□□□ 0.89
CHD9Q3L8U1 AL162741.1-201ENST00000565563 1558 ntBASIC20.61■□□□□ 0.89
CHD9Q3L8U1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 MIR4674-201ENST00000582457 87 ntBASIC20.6■□□□□ 0.89
CHD9Q3L8U1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.6■□□□□ 0.89
CHD9Q3L8U1 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 HLA-A-201ENST00000376802 1334 ntBASIC20.59■□□□□ 0.89
CHD9Q3L8U1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.59■□□□□ 0.89
CHD9Q3L8U1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 AC012615.1-201ENST00000565797 1299 ntBASIC20.58■□□□□ 0.89
CHD9Q3L8U1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CHD9Q3L8U1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.58■□□□□ 0.88
CHD9Q3L8U1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHD9Q3L8U1 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CHD9Q3L8U1 KRT18P31-201ENST00000506277 1292 ntBASIC20.58■□□□□ 0.88
CHD9Q3L8U1 AL662844.1-201ENST00000546340 181 ntBASIC20.58■□□□□ 0.88
CHD9Q3L8U1 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHD9Q3L8U1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.58■□□□□ 0.88
CHD9Q3L8U1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CHD9Q3L8U1 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms