Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 AL138966.2-201ENST00000621997 464 ntBASIC18.62■□□□□ 0.57
COL28A1Q2UY09 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 MESTP1-201ENST00000404287 994 ntBASIC18.61■□□□□ 0.57
COL28A1Q2UY09 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 FDX1P1-201ENST00000449115 551 ntBASIC18.61■□□□□ 0.57
COL28A1Q2UY09 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 COX11P1-201ENST00000489116 835 ntBASIC18.61■□□□□ 0.57
COL28A1Q2UY09 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL28A1Q2UY09 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 AC097488.1-201ENST00000507834 756 ntBASIC18.6■□□□□ 0.57
COL28A1Q2UY09 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.6■□□□□ 0.57
COL28A1Q2UY09 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 AC005332.1-201ENST00000577698 1310 ntBASIC18.59■□□□□ 0.57
COL28A1Q2UY09 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 AC004263.2-201ENST00000617183 678 ntBASIC18.59■□□□□ 0.57
COL28A1Q2UY09 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL28A1Q2UY09 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms