Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHROOM1Q2M3G4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHROOM1Q2M3G4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.66■■□□□ 1.22
SHROOM1Q2M3G4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.66■■□□□ 1.22
SHROOM1Q2M3G4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHROOM1Q2M3G4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 KRT8P11-201ENST00000409686 1436 ntBASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 CCR12P-201ENST00000446203 998 ntBASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 YBX1P2-201ENST00000489612 999 ntBASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHROOM1Q2M3G4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SHROOM1Q2M3G4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.64■■□□□ 1.22
SHROOM1Q2M3G4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SHROOM1Q2M3G4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC22.64■■□□□ 1.22
SHROOM1Q2M3G4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 PCDHAC2-203ENST00000615316 3011 ntBASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHROOM1Q2M3G4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 AL353719.1-201ENST00000566847 864 ntBASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 MYC-208ENST00000641036 567 ntBASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
SHROOM1Q2M3G4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 AP003041.3-201ENST00000527151 707 ntBASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 AC011558.1-201ENST00000623459 338 ntBASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SHROOM1Q2M3G4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
SHROOM1Q2M3G4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms