Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NPAP1P7-201ENST00000613027 823 ntBASIC19.35■□□□□ 0.69
CXCL12P48061 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.35■□□□□ 0.69
CXCL12P48061 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CXCL12P48061 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CXCL12P48061 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.34■□□□□ 0.69
CXCL12P48061 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 SPDYE15P-201ENST00000424157 909 ntBASIC19.34■□□□□ 0.69
CXCL12P48061 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.34■□□□□ 0.69
CXCL12P48061 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL12P48061 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.34■□□□□ 0.69
CXCL12P48061 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.34■□□□□ 0.69
CXCL12P48061 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CXCL12P48061 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL12P48061 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CXCL12P48061 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CXCL12P48061 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CXCL12P48061 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CXCL12P48061 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CXCL12P48061 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 AC246785.2-201ENST00000432512 513 ntBASIC19.33■□□□□ 0.68
CXCL12P48061 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.33■□□□□ 0.68
CXCL12P48061 RN7SL510P-201ENST00000581311 263 ntBASIC19.33■□□□□ 0.68
CXCL12P48061 AC092329.2-201ENST00000598402 547 ntBASIC19.33■□□□□ 0.68
CXCL12P48061 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.33■□□□□ 0.68
CXCL12P48061 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.33■□□□□ 0.68
CXCL12P48061 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL12P48061 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CXCL12P48061 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.33■□□□□ 0.68
CXCL12P48061 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.33■□□□□ 0.68
CXCL12P48061 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CXCL12P48061 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.32■□□□□ 0.68
CXCL12P48061 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.32■□□□□ 0.68
CXCL12P48061 BX119927.1-201ENST00000636596 1552 ntBASIC19.32■□□□□ 0.68
CXCL12P48061 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
CXCL12P48061 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CXCL12P48061 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.32■□□□□ 0.68
CXCL12P48061 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CXCL12P48061 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 KRT8P11-201ENST00000409686 1436 ntBASIC19.32■□□□□ 0.68
CXCL12P48061 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.32■□□□□ 0.68
CXCL12P48061 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL12P48061 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.31■□□□□ 0.68
CXCL12P48061 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.31■□□□□ 0.68
CXCL12P48061 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.31■□□□□ 0.68
CXCL12P48061 AL645929.1-201ENST00000420084 975 ntBASIC19.31■□□□□ 0.68
CXCL12P48061 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.31■□□□□ 0.68
CXCL12P48061 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.31■□□□□ 0.68
CXCL12P48061 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.31■□□□□ 0.68
CXCL12P48061 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL12P48061 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CXCL12P48061 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 EP400NL-214ENST00000641289 2402 ntBASIC19.3■□□□□ 0.68
CXCL12P48061 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 HBZP1-201ENST00000354915 429 ntBASIC19.3■□□□□ 0.68
CXCL12P48061 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms