Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.06■□□□□ 0.48
PRKNO60260 AC007952.6-201ENST00000573168 2673 ntBASIC18.06■□□□□ 0.48
PRKNO60260 AC003957.1-201ENST00000625108 2673 ntBASIC18.06■□□□□ 0.48
PRKNO60260 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.05■□□□□ 0.48
PRKNO60260 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.05■□□□□ 0.48
PRKNO60260 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
PRKNO60260 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.05■□□□□ 0.48
PRKNO60260 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PRKNO60260 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PRKNO60260 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.05■□□□□ 0.48
PRKNO60260 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 KSR1P1-201ENST00000446298 240 ntBASIC18.05■□□□□ 0.48
PRKNO60260 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.05■□□□□ 0.48
PRKNO60260 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.05■□□□□ 0.48
PRKNO60260 AC026471.5-201ENST00000615068 467 ntBASIC18.05■□□□□ 0.48
PRKNO60260 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.05■□□□□ 0.48
PRKNO60260 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKNO60260 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PRKNO60260 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.04■□□□□ 0.48
PRKNO60260 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PRKNO60260 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PRKNO60260 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.04■□□□□ 0.48
PRKNO60260 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PRKNO60260 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.04■□□□□ 0.48
PRKNO60260 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.04■□□□□ 0.48
PRKNO60260 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.04■□□□□ 0.48
PRKNO60260 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.04■□□□□ 0.48
PRKNO60260 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.04■□□□□ 0.48
PRKNO60260 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.04■□□□□ 0.48
PRKNO60260 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKNO60260 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
PRKNO60260 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PRKNO60260 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PRKNO60260 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PRKNO60260 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PRKNO60260 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PRKNO60260 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PRKNO60260 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.03■□□□□ 0.48
PRKNO60260 AL355075.4-201ENST00000554988 638 ntBASIC18.03■□□□□ 0.48
PRKNO60260 AP003071.4-201ENST00000562276 1284 ntBASIC18.03■□□□□ 0.48
PRKNO60260 MIR4785-201ENST00000585005 73 ntBASIC18.03■□□□□ 0.48
PRKNO60260 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.03■□□□□ 0.48
PRKNO60260 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PRKNO60260 KRT16P1-201ENST00000399124 1418 ntBASIC18.03■□□□□ 0.48
PRKNO60260 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PRKNO60260 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PRKNO60260 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.03■□□□□ 0.48
PRKNO60260 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PRKNO60260 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.02■□□□□ 0.48
PRKNO60260 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PRKNO60260 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.02■□□□□ 0.48
PRKNO60260 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PRKNO60260 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
PRKNO60260 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.02■□□□□ 0.48
PRKNO60260 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.02■□□□□ 0.48
PRKNO60260 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.02■□□□□ 0.48
PRKNO60260 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.02■□□□□ 0.48
PRKNO60260 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.02■□□□□ 0.48
PRKNO60260 AL445675.2-201ENST00000620291 557 ntBASIC18.02■□□□□ 0.48
PRKNO60260 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PRKNO60260 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PRKNO60260 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
PRKNO60260 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
PRKNO60260 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
PRKNO60260 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.01■□□□□ 0.47
PRKNO60260 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.01■□□□□ 0.47
PRKNO60260 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms