Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AC104819.1-201ENST00000504587 486 ntBASIC15.1■□□□□ 0.01
COL6A5A8TX70 AC073648.2-201ENST00000510116 352 ntBASIC15.1■□□□□ 0.01
COL6A5A8TX70 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 TERT-206ENST00000508104 2486 ntTSL 5 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 ECEL1P1-201ENST00000373592 1742 ntBASIC15.1■□□□□ 0.01
COL6A5A8TX70 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AKR1C7P-201ENST00000305623 895 ntBASIC15.1■□□□□ 0.01
COL6A5A8TX70 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A5A8TX70 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 RPSAP43-201ENST00000402237 625 ntBASIC15.1■□□□□ 0.01
COL6A5A8TX70 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 AF186996.4-201ENST00000467186 377 ntBASIC15.1■□□□□ 0.01
COL6A5A8TX70 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A5A8TX70 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 AC148477.8-201ENST00000624298 468 ntBASIC15.09■□□□□ 0.01
COL6A5A8TX70 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
COL6A5A8TX70 AC074051.2-201ENST00000565115 352 ntBASIC15.09■□□□□ 0.01
COL6A5A8TX70 RNF126P1-202ENST00000569893 925 ntBASIC15.09■□□□□ 0.01
COL6A5A8TX70 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 AC112497.1-201ENST00000624824 639 ntBASIC15.09■□□□□ 0.01
COL6A5A8TX70 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL6A5A8TX70 LINC01465-201ENST00000408887 1940 ntBASIC15.08■□□□□ 0.01
COL6A5A8TX70 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0.01
COL6A5A8TX70 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC15.08■□□□□ 0.01
COL6A5A8TX70 KRT16P6-202ENST00000425692 1426 ntBASIC15.08■□□□□ 0.01
COL6A5A8TX70 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.08■□□□□ 0.01
COL6A5A8TX70 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0.01
COL6A5A8TX70 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
COL6A5A8TX70 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 C9orf163-202ENST00000624034 2573 ntBASIC15.08■□□□□ 0
COL6A5A8TX70 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.08■□□□□ 0
COL6A5A8TX70 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.08■□□□□ 0
COL6A5A8TX70 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.08■□□□□ 0
COL6A5A8TX70 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.08■□□□□ 0
COL6A5A8TX70 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
COL6A5A8TX70 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.08■□□□□ 0
COL6A5A8TX70 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.08■□□□□ 0
COL6A5A8TX70 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.08■□□□□ 0
COL6A5A8TX70 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.08■□□□□ 0
COL6A5A8TX70 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.08■□□□□ 0
COL6A5A8TX70 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
COL6A5A8TX70 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 AC106730.1-201ENST00000566722 1090 ntBASIC15.08■□□□□ 0
COL6A5A8TX70 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 TP73-AS1-207ENST00000624167 988 ntBASIC15.08■□□□□ 0
COL6A5A8TX70 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC15.08■□□□□ 0
COL6A5A8TX70 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL6A5A8TX70 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.08■□□□□ 0
COL6A5A8TX70 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
COL6A5A8TX70 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.07■□□□□ 0
COL6A5A8TX70 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.07■□□□□ 0
COL6A5A8TX70 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms