Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC011755.1-201ENST00000623763 2049 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RNU6-560P-201ENST00000364007 108 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RN7SKP187-201ENST00000365536 330 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC004386.1-201ENST00000393214 761 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RN7SKP285-201ENST00000410137 318 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RN7SKP29-201ENST00000410957 272 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC027644.1-201ENST00000419595 298 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 ATP5F1P1-201ENST00000433775 569 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL138787.1-202ENST00000437804 898 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL627224.1-201ENST00000448334 444 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RNF138P1-201ENST00000502765 546 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC006499.5-201ENST00000505037 514 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC073358.1-201ENST00000505671 684 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 PTGES3P3-201ENST00000511479 482 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AP003072.1-201ENST00000531740 145 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC008752.3-201ENST00000588113 712 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC013553.2-201ENST00000604244 589 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC124312.5-201ENST00000604451 268 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 FAM27E4-201ENST00000605259 342 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL353726.1-201ENST00000614041 1000 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC091834.1-201ENST00000614543 472 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 MIR7844-201ENST00000616161 122 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC024884.1-201ENST00000620583 399 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC129778.1-202ENST00000623812 261 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AL591379.1-207ENST00000635982 261 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 AC112487.2-201ENST00000637950 304 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 TEX21P-201ENST00000447107 1476 ntBASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC026523.2-201ENST00000625039 7739 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 OR1L1-202ENST00000373686 1083 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 RNU5A-6P-201ENST00000384136 116 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 HMGB1P10-201ENST00000395823 563 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 CCNG1P1-201ENST00000406783 885 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 RPS15AP38-201ENST00000413110 372 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC093019.1-201ENST00000443135 252 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ARL5AP2-201ENST00000444698 533 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 COX6CP12-201ENST00000446748 202 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 OR6K1P-201ENST00000456766 971 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC093166.4-201ENST00000457867 318 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 SNORD125-201ENST00000459538 96 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 RN7SL168P-201ENST00000463821 279 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC091959.2-201ENST00000477363 321 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC079841.1-201ENST00000481228 950 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC023424.1-201ENST00000496058 459 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 SUMO1P1-201ENST00000497904 306 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms