Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC244100.1-202ENST00000621554 382 ntBASIC4.35□□□□□ -1.71
TRIM4Q9C037 AC091953.5-201ENST00000622919 233 ntBASIC4.35□□□□□ -1.71
TRIM4Q9C037 AP006248.2-201ENST00000623309 592 ntBASIC4.35□□□□□ -1.71
TRIM4Q9C037 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM4Q9C037 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM4Q9C037 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.35□□□□□ -1.71
TRIM4Q9C037 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM4Q9C037 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM4Q9C037 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM4Q9C037 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM4Q9C037 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM4Q9C037 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
TRIM4Q9C037 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM4Q9C037 AP000756.2-201ENST00000624168 2567 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC011155.1-201ENST00000316512 456 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNA5SP322-201ENST00000363617 119 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNU1-13P-201ENST00000384499 162 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNU1-89P-201ENST00000384592 164 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNA5SP317-201ENST00000410176 116 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNA5SP239-201ENST00000410218 129 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNA5SP311-201ENST00000411290 116 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC140479.3-201ENST00000418944 1126 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 SNRPFP2-201ENST00000440710 251 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AL645939.1-201ENST00000453429 797 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 ISCUP1-201ENST00000454451 448 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC068305.1-201ENST00000497406 726 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNA5SP315-201ENST00000516340 116 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 RNA5SP312-201ENST00000517068 116 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 OR8R1P-201ENST00000543943 764 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 RN7SL652P-201ENST00000577769 300 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 MIR3944-201ENST00000581277 108 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC090181.2-201ENST00000602975 672 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC023762.1-201ENST00000603280 584 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC008966.2-201ENST00000606157 453 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 AC090948.1-201ENST00000607464 549 ntBASIC4.34□□□□□ -1.71
TRIM4Q9C037 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM4Q9C037 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM4Q9C037 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
TRIM4Q9C037 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
TRIM4Q9C037 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 ZNF962P-201ENST00000443465 3140 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL391684.1-202ENST00000641293 1636 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 RNU1-15P-201ENST00000353977 144 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 MTCO1P51-201ENST00000427672 1060 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 H2AFZP5-201ENST00000446960 382 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL935212.3-201ENST00000450729 284 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC105137.1-201ENST00000484355 562 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC025884.1-201ENST00000556034 378 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL109741.3-201ENST00000561748 592 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AF131215.7-201ENST00000602443 707 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 AL161756.2-201ENST00000604597 246 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 AP002360.3-201ENST00000607673 710 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 MIR6075-201ENST00000620782 95 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRIM4Q9C037 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.33□□□□□ -1.72
TRIM4Q9C037 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM4Q9C037 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM4Q9C037 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM4Q9C037 AC007342.7-201ENST00000624610 2337 ntBASIC4.32□□□□□ -1.72
TRIM4Q9C037 AC105074.1-201ENST00000623380 3095 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms