Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RN7SKP118-201ENST00000364331 330 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 Y_RNA.263-201ENST00000364659 114 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RNY3P13-201ENST00000365542 102 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 ENSAP1-201ENST00000392855 326 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RPL7P60-201ENST00000397636 735 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RPL12P23-201ENST00000405880 490 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RN7SKP205-201ENST00000410999 307 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 DPPA2P2-201ENST00000418220 897 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL590609.2-201ENST00000421430 368 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RGS17P1-201ENST00000423358 553 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL138799.3-201ENST00000438968 350 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC104308.1-201ENST00000454621 333 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 HMGB1P21-201ENST00000502313 581 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC020893.1-201ENST00000502452 580 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC008629.2-201ENST00000503783 483 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 COX7A2P2-201ENST00000505291 250 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 SCARNA24.1-201ENST00000516465 137 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC008429.2-201ENST00000523057 864 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 SNORD96A-201ENST00000606577 79 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 OR6R2P-201ENST00000609216 300 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 BX323046.1-201ENST00000610145 535 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL590099.1-201ENST00000615276 138 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL354950.2-201ENST00000617939 290 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC024940.5-201ENST00000622889 474 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC015908.5-201ENST00000623289 343 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC073488.9-201ENST00000631601 754 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AP002370.1-201ENST00000528055 1602 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AP005432.1-201ENST00000580891 3485 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC011978.2-201ENST00000569835 2054 ntBASIC5.11□□□□□ -1.59
CCDC140Q96MF4 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC005332.9-201ENST00000620266 2921 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 OR1S2-201ENST00000302592 978 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC010894.1-201ENST00000313760 361 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RNU1-5P-201ENST00000362684 144 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 Y_RNA.142-201ENST00000363491 102 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms