Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 AL031595.2-201ENST00000624215 19071 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 SNORA60-201ENST00000362396 134 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 U1.1-201ENST00000384101 164 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 MIR34B-201ENST00000385076 84 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AL355994.1-201ENST00000424379 260 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 RPL31P61-201ENST00000496160 376 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A4P53420 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.26□□□□□ -1.73
COL4A4P53420 AC244505.7-201ENST00000599675 272 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A4P53420 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A4P53420 AC097504.1-201ENST00000515103 2415 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A4P53420 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A4P53420 ZNF962P-201ENST00000443465 3140 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A4P53420 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A4P53420 OR52E6-202ENST00000379946 954 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 AC117434.1-201ENST00000419971 836 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A4P53420 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A4P53420 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A4P53420 AC092691.2-201ENST00000461787 803 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
COL4A4P53420 AC093853.1-201ENST00000515689 483 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 RNU1-103P-201ENST00000516502 125 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 UBTFL9-201ENST00000534504 1148 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A4P53420 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.25□□□□□ -1.73
COL4A4P53420 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A4P53420 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.25□□□□□ -1.73
COL4A4P53420 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A4P53420 AC026790.2-201ENST00000606282 430 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 AC073530.2-201ENST00000623987 261 ntBASIC4.25□□□□□ -1.73
COL4A4P53420 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
COL4A4P53420 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL4A4P53420 MARK2P15-201ENST00000432204 2186 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A4P53420 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 RNA5SP52-201ENST00000362448 134 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 HSPD1P21-201ENST00000436541 245 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 MTND6P5-201ENST00000448266 512 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 PDSS1P2-201ENST00000449397 678 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.24□□□□□ -1.73
COL4A4P53420 RPS4XP10-201ENST00000465034 731 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 PRELID3BP6-201ENST00000503839 571 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 STMN1P2-201ENST00000508435 439 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 RN7SKP18-201ENST00000516005 275 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 FTH1P11-201ENST00000517577 551 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.24□□□□□ -1.73
COL4A4P53420 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.24□□□□□ -1.73
COL4A4P53420 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 AL645927.2-201ENST00000618350 349 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A4P53420 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 ZNF833P-201ENST00000424938 1494 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 AP004289.2-201ENST00000444413 1457 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
COL4A4P53420 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.24□□□□□ -1.73
COL4A4P53420 AC125336.1-201ENST00000508893 2827 ntBASIC4.24□□□□□ -1.73
COL4A4P53420 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL4A4P53420 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A4P53420 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A4P53420 SNORD3H-201ENST00000384486 214 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 MIR490-201ENST00000384865 128 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A4P53420 RPS3AP46-201ENST00000448352 682 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A4P53420 RNU7-143P-201ENST00000516781 65 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.23□□□□□ -1.73
COL4A4P53420 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A4P53420 CYP4A43P-201ENST00000568156 121 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 MIR4513-201ENST00000581077 86 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A4P53420 ELOCP35-201ENST00000604289 336 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AC005000.2-201ENST00000605468 310 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AP000240.1-201ENST00000609910 452 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A4P53420 AC103798.2-201ENST00000624292 632 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A4P53420 HSPD1P11-201ENST00000508643 1702 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A4P53420 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A4P53420 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 PRO1804-201ENST00000623780 2050 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A4P53420 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms