Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SNORD91B-202ENST00000608459 222 ntBASIC5.61□□□□□ -1.51
MSH6P52701 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.61□□□□□ -1.51
MSH6P52701 SCARNA15.3-201ENST00000626315 122 ntBASIC5.61□□□□□ -1.51
MSH6P52701 SCARNA4.1-201ENST00000628597 123 ntBASIC5.61□□□□□ -1.51
MSH6P52701 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH6P52701 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH6P52701 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH6P52701 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
MSH6P52701 AC009229.4-201ENST00000623854 1947 ntBASIC5.61□□□□□ -1.51
MSH6P52701 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH6P52701 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.61□□□□□ -1.51
MSH6P52701 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
MSH6P52701 ERCC6-202ENST00000374127 1782 ntBASIC5.6□□□□□ -1.51
MSH6P52701 NPM1P38-201ENST00000403835 865 ntBASIC5.6□□□□□ -1.51
MSH6P52701 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH6P52701 AC018635.1-201ENST00000468292 1030 ntBASIC5.6□□□□□ -1.51
MSH6P52701 AC108022.1-201ENST00000493466 478 ntBASIC5.6□□□□□ -1.51
MSH6P52701 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 DEFB109D-201ENST00000529497 240 ntBASIC5.6□□□□□ -1.51
MSH6P52701 YPEL5P3-201ENST00000547227 352 ntBASIC5.6□□□□□ -1.51
MSH6P52701 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.6□□□□□ -1.51
MSH6P52701 AC055839.1-201ENST00000634467 498 ntBASIC5.6□□□□□ -1.51
MSH6P52701 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.6□□□□□ -1.51
MSH6P52701 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.6□□□□□ -1.51
MSH6P52701 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH6P52701 AL049781.1-201ENST00000623195 3585 ntBASIC5.6□□□□□ -1.51
MSH6P52701 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH6P52701 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH6P52701 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH6P52701 RNA5SP97-201ENST00000365006 84 ntBASIC5.59□□□□□ -1.51
MSH6P52701 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
MSH6P52701 RNU1-44P-201ENST00000384453 163 ntBASIC5.59□□□□□ -1.51
MSH6P52701 SNORD3H-201ENST00000384486 214 ntBASIC5.59□□□□□ -1.51
MSH6P52701 SNORA3.3-201ENST00000408712 125 ntBASIC5.59□□□□□ -1.51
MSH6P52701 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 RPS7P15-201ENST00000415804 584 ntBASIC5.59□□□□□ -1.51
MSH6P52701 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.59□□□□□ -1.51
MSH6P52701 AC017078.1-201ENST00000416146 368 ntBASIC5.59□□□□□ -1.51
MSH6P52701 AL035423.1-201ENST00000420331 213 ntBASIC5.59□□□□□ -1.51
MSH6P52701 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH6P52701 AL133162.1-201ENST00000463228 453 ntBASIC5.59□□□□□ -1.51
MSH6P52701 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH6P52701 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 KRT19P6-201ENST00000510983 209 ntBASIC5.59□□□□□ -1.51
MSH6P52701 NDUFA5P2-201ENST00000519723 344 ntBASIC5.59□□□□□ -1.51
MSH6P52701 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.59□□□□□ -1.51
MSH6P52701 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH6P52701 MIR4513-201ENST00000581077 86 ntBASIC5.59□□□□□ -1.51
MSH6P52701 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH6P52701 AC114878.2-201ENST00000604863 1251 ntBASIC5.59□□□□□ -1.51
MSH6P52701 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH6P52701 AF001550.2-201ENST00000636643 217 ntBASIC5.59□□□□□ -1.51
MSH6P52701 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH6P52701 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH6P52701 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH6P52701 AC074029.4-201ENST00000624796 1859 ntBASIC5.59□□□□□ -1.52
MSH6P52701 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
MSH6P52701 RNA5SP267-201ENST00000364893 126 ntBASIC5.58□□□□□ -1.52
MSH6P52701 AL078604.1-201ENST00000404609 466 ntBASIC5.58□□□□□ -1.52
MSH6P52701 UBTFL3-201ENST00000418934 1024 ntBASIC5.58□□□□□ -1.52
MSH6P52701 Z97055.1-201ENST00000419730 712 ntBASIC5.58□□□□□ -1.52
MSH6P52701 AL158156.1-201ENST00000422509 473 ntBASIC5.58□□□□□ -1.52
MSH6P52701 AL358472.1-201ENST00000431295 329 ntBASIC5.58□□□□□ -1.52
MSH6P52701 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH6P52701 UBTFL6-201ENST00000477929 1024 ntBASIC5.58□□□□□ -1.52
MSH6P52701 RNA5SP179-201ENST00000517284 121 ntBASIC5.58□□□□□ -1.52
MSH6P52701 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH6P52701 AC024224.1-201ENST00000538284 609 ntBASIC5.58□□□□□ -1.52
MSH6P52701 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.58□□□□□ -1.52
MSH6P52701 AP005262.1-201ENST00000582646 997 ntBASIC5.58□□□□□ -1.52
MSH6P52701 AC022146.1-201ENST00000595307 847 ntBASIC5.58□□□□□ -1.52
MSH6P52701 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH6P52701 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH6P52701 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH6P52701 AC093849.1-201ENST00000563631 2209 ntBASIC5.58□□□□□ -1.52
MSH6P52701 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH6P52701 EOGT-210ENST00000615922 1931 ntBASIC5.58□□□□□ -1.52
MSH6P52701 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH6P52701 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
MSH6P52701 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH6P52701 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH6P52701 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH6P52701 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
MSH6P52701 AL591419.1-201ENST00000427423 339 ntBASIC5.57□□□□□ -1.52
MSH6P52701 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.57□□□□□ -1.52
MSH6P52701 AC115115.1-201ENST00000449927 248 ntBASIC5.57□□□□□ -1.52
MSH6P52701 BX510359.1-201ENST00000456973 237 ntBASIC5.57□□□□□ -1.52
MSH6P52701 AC092691.2-201ENST00000461787 803 ntBASIC5.57□□□□□ -1.52
MSH6P52701 HSPD1P15-201ENST00000505573 1122 ntBASIC5.57□□□□□ -1.52
MSH6P52701 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH6P52701 SCARNA14-201ENST00000516903 136 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms